Gene : Glyma.01G178600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12313:SF12 - RING ZINC FINGER PROTEIN-RELATED Genomic Order:  1786
Name:  ? Glyma.01G178600 Secondary Identifier:  ? PAC:30544900
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G178600 0.5kb upstream 0.5kb upstream 2012 true Chr01: 51470565-51472576 Glycine max
Glyma.01G178600 0.5kb upstream 0.5kb upstream 500 false Chr01: 51470565-51471064 Glycine max
Glyma.01G178600 0.5kb downstream 0.5kb downstream 2012 true Chr01: 51471065-51473076 Glycine max
Glyma.01G178600 0.5kb downstream 0.5kb downstream 500 false Chr01: 51472577-51473076 Glycine max
Glyma.01G178600 1.0kb upstream 1.0kb upstream 2512 true Chr01: 51470065-51472576 Glycine max
Glyma.01G178600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 51470065-51471064 Glycine max
Glyma.01G178600 1.0kb downstream 1.0kb downstream 2512 true Chr01: 51471065-51473576 Glycine max
Glyma.01G178600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 51472577-51473576 Glycine max
Glyma.01G178600 2.0kb upstream 2.0kb upstream 3512 true Chr01: 51469065-51472576 Glycine max
Glyma.01G178600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 51469065-51471064 Glycine max
Glyma.01G178600 2.0kb downstream 2.0kb downstream 3512 true Chr01: 51471065-51474576 Glycine max
Glyma.01G178600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 51472577-51474576 Glycine max
Glyma.01G178600 5.0kb upstream 5.0kb upstream 6512 true Chr01: 51466065-51472576 Glycine max
Glyma.01G178600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 51466065-51471064 Glycine max
Glyma.01G178600 5.0kb downstream 5.0kb downstream 6512 true Chr01: 51471065-51477576 Glycine max
Glyma.01G178600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 51472577-51477576 Glycine max
Glyma.01G178600 10.0kb upstream 10.0kb upstream 11512 true Chr01: 51461065-51472576 Glycine max
Glyma.01G178600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 51461065-51471064 Glycine max
Glyma.01G178600 10.0kb downstream 10.0kb downstream 11512 true Chr01: 51471065-51482576 Glycine max
Glyma.01G178600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 51472577-51482576 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299484 5265 Fabidae View MSA
124066658 5270 Rosid View MSA
123750017 5271 Pentapetalae View MSA
122793132 5272 Eudicot View MSA
122043579 5273 Angiosperm View MSA
121350090 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.2216 0.0 41.7384   Low
cufflinks 17.727 0.0 48.2033   Low
cufflinks 17.8346 0.0 48.4539    
cufflinks 28.9111 0.0 77.176 High High
cufflinks 26.8941 0.0 71.8207 High  
cufflinks 24.6202 0.0 65.8717 High  
cufflinks 21.5489 0.0 57.8562    
cufflinks 27.3581 0.0 73.0848 High  
cufflinks 24.9974 0.0 66.8725 High  
cufflinks 14.513     High  
cufflinks 30.608     High High
cufflinks 12.401     High  
cufflinks 10.252     High  
cufflinks 9.611     High  
cufflinks 18.241     High  
cufflinks 10.436     High  
cufflinks 14.392     High  
cufflinks 12.59     High  
cufflinks 13.624     High  
cufflinks 10.623     High  
cufflinks 26.058     High High
cufflinks 9.788     High  
cufflinks 7.624     High Low
cufflinks 20.353     High  
cufflinks 10.403     High  
cufflinks 22.24     High High

0 Strain