Gene : Glyma.01G188900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24067//PTHR24067:SF112 - UBIQUITIN-CONJUGATING ENZYME E2 Genomic Order:  1889
Name:  ? Glyma.01G188900 Secondary Identifier:  ? PAC:30543459
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G188900 0.5kb upstream 0.5kb upstream 4706 true Chr01: 52405393-52410098 Glycine max
Glyma.01G188900 0.5kb upstream 0.5kb upstream 500 false Chr01: 52409599-52410098 Glycine max
Glyma.01G188900 0.5kb downstream 0.5kb downstream 4706 true Chr01: 52404893-52409598 Glycine max
Glyma.01G188900 0.5kb downstream 0.5kb downstream 500 false Chr01: 52404893-52405392 Glycine max
Glyma.01G188900 1.0kb upstream 1.0kb upstream 5206 true Chr01: 52405393-52410598 Glycine max
Glyma.01G188900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 52409599-52410598 Glycine max
Glyma.01G188900 1.0kb downstream 1.0kb downstream 5206 true Chr01: 52404393-52409598 Glycine max
Glyma.01G188900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 52404393-52405392 Glycine max
Glyma.01G188900 2.0kb upstream 2.0kb upstream 6206 true Chr01: 52405393-52411598 Glycine max
Glyma.01G188900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 52409599-52411598 Glycine max
Glyma.01G188900 2.0kb downstream 2.0kb downstream 6206 true Chr01: 52403393-52409598 Glycine max
Glyma.01G188900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 52403393-52405392 Glycine max
Glyma.01G188900 5.0kb upstream 5.0kb upstream 9206 true Chr01: 52405393-52414598 Glycine max
Glyma.01G188900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 52409599-52414598 Glycine max
Glyma.01G188900 5.0kb downstream 5.0kb downstream 9206 true Chr01: 52400393-52409598 Glycine max
Glyma.01G188900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 52400393-52405392 Glycine max
Glyma.01G188900 10.0kb upstream 10.0kb upstream 14206 true Chr01: 52405393-52419598 Glycine max
Glyma.01G188900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 52409599-52419598 Glycine max
Glyma.01G188900 10.0kb downstream 10.0kb downstream 14206 true Chr01: 52395393-52409598 Glycine max
Glyma.01G188900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 52395393-52405392 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248128 5265 Fabidae Singleton cluster - no MSA
124074734 5270 Rosid View MSA
123752891 5271 Pentapetalae View MSA
122794655 5272 Eudicot View MSA
122047112 5273 Angiosperm View MSA
121344973 5274 Embryophyte View MSA
123425853 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.4638 0.0 60.1397 High Low
cufflinks 24.1077 0.0 64.424 High  
cufflinks 34.0565 0.0 91.031 High  
cufflinks 30.7946 0.0 82.1767 High  
cufflinks 28.9611 0.0 77.2649 High  
cufflinks 40.3013 0.0 108.187 High High
cufflinks 29.0479 0.0 77.4962 High  
cufflinks 23.4057 0.0 62.5665 High Low
cufflinks 28.7217 0.0 76.6257 High  
cufflinks 4.962        
cufflinks 3.785        
cufflinks 5.938       High
cufflinks 4.545        
cufflinks 3.801        
cufflinks 4.07        
cufflinks 4.49        
cufflinks 3.932        
cufflinks 5.619       High
cufflinks 6.647       High
cufflinks 4.639        
cufflinks 3.053       Low
cufflinks 4.604        
cufflinks 5.754       High
cufflinks 3.719        
cufflinks 4.466        
cufflinks 3.676        

0 Strain