Gene : Glyma.02G075900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12161:SF21 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  759
Name:  ? Glyma.02G075900 Secondary Identifier:  ? PAC:30509872
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G075900 0.5kb upstream 0.5kb upstream 4747 true Chr02: 6635679-6640425 Glycine max
Glyma.02G075900 0.5kb upstream 0.5kb upstream 500 false Chr02: 6635679-6636178 Glycine max
Glyma.02G075900 0.5kb downstream 0.5kb downstream 4747 true Chr02: 6636179-6640925 Glycine max
Glyma.02G075900 0.5kb downstream 0.5kb downstream 500 false Chr02: 6640426-6640925 Glycine max
Glyma.02G075900 1.0kb upstream 1.0kb upstream 5247 true Chr02: 6635179-6640425 Glycine max
Glyma.02G075900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 6635179-6636178 Glycine max
Glyma.02G075900 1.0kb downstream 1.0kb downstream 5247 true Chr02: 6636179-6641425 Glycine max
Glyma.02G075900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 6640426-6641425 Glycine max
Glyma.02G075900 2.0kb upstream 2.0kb upstream 6247 true Chr02: 6634179-6640425 Glycine max
Glyma.02G075900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 6634179-6636178 Glycine max
Glyma.02G075900 2.0kb downstream 2.0kb downstream 6247 true Chr02: 6636179-6642425 Glycine max
Glyma.02G075900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 6640426-6642425 Glycine max
Glyma.02G075900 5.0kb upstream 5.0kb upstream 9247 true Chr02: 6631179-6640425 Glycine max
Glyma.02G075900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 6631179-6636178 Glycine max
Glyma.02G075900 5.0kb downstream 5.0kb downstream 9247 true Chr02: 6636179-6645425 Glycine max
Glyma.02G075900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 6640426-6645425 Glycine max
Glyma.02G075900 10.0kb upstream 10.0kb upstream 14247 true Chr02: 6626179-6640425 Glycine max
Glyma.02G075900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 6626179-6636178 Glycine max
Glyma.02G075900 10.0kb downstream 10.0kb downstream 14247 true Chr02: 6636179-6650425 Glycine max
Glyma.02G075900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 6640426-6650425 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301287 5265 Fabidae View MSA
124068076 5270 Rosid View MSA
123736868 5271 Pentapetalae View MSA
122789571 5272 Eudicot View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.69614 0.0 23.4531    
cufflinks 5.18109 0.0 14.5004   Low
cufflinks 9.63619 0.0 25.8606    
cufflinks 9.55342 0.0 25.6514    
cufflinks 6.69317 0.0 18.3272    
cufflinks 10.2252 0.0 27.3974   High
cufflinks 7.31364 0.0 19.9265    
cufflinks 9.84706 0.0 26.408    
cufflinks 5.95889 0.0 16.4532   Low
cufflinks 10.75     High High
cufflinks 7.389     High  
cufflinks 6.533        
cufflinks 4.749        
cufflinks 2.744       Low
cufflinks 3.138       Low
cufflinks 3.97        
cufflinks 22.159     High High
cufflinks 5.825        
cufflinks 3.42        
cufflinks 4.217        
cufflinks 5.736     High  
cufflinks 3.923        
cufflinks 3.577        
cufflinks 5.957        
cufflinks 3.897        
cufflinks 9.773     High High

0 Strain