Gene : Glyma.19G006100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR23068//PTHR23068:SF12 - DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED Genomic Order:  61
Name:  ? Glyma.19G006100 Secondary Identifier:  ? PAC:30513556
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G006100 0.5kb upstream 0.5kb upstream 10206 true Chr19: 563133-573338 Glycine max
Glyma.19G006100 0.5kb upstream 0.5kb upstream 500 false Chr19: 572839-573338 Glycine max
Glyma.19G006100 0.5kb downstream 0.5kb downstream 10206 true Chr19: 562633-572838 Glycine max
Glyma.19G006100 0.5kb downstream 0.5kb downstream 500 false Chr19: 562633-563132 Glycine max
Glyma.19G006100 1.0kb upstream 1.0kb upstream 10706 true Chr19: 563133-573838 Glycine max
Glyma.19G006100 1.0kb upstream 1.0kb upstream 1000 false Chr19: 572839-573838 Glycine max
Glyma.19G006100 1.0kb downstream 1.0kb downstream 10706 true Chr19: 562133-572838 Glycine max
Glyma.19G006100 1.0kb downstream 1.0kb downstream 1000 false Chr19: 562133-563132 Glycine max
Glyma.19G006100 2.0kb upstream 2.0kb upstream 11706 true Chr19: 563133-574838 Glycine max
Glyma.19G006100 2.0kb upstream 2.0kb upstream 2000 false Chr19: 572839-574838 Glycine max
Glyma.19G006100 2.0kb downstream 2.0kb downstream 11706 true Chr19: 561133-572838 Glycine max
Glyma.19G006100 2.0kb downstream 2.0kb downstream 2000 false Chr19: 561133-563132 Glycine max
Glyma.19G006100 5.0kb upstream 5.0kb upstream 14706 true Chr19: 563133-577838 Glycine max
Glyma.19G006100 5.0kb upstream 5.0kb upstream 5000 false Chr19: 572839-577838 Glycine max
Glyma.19G006100 5.0kb downstream 5.0kb downstream 14706 true Chr19: 558133-572838 Glycine max
Glyma.19G006100 5.0kb downstream 5.0kb downstream 5000 false Chr19: 558133-563132 Glycine max
Glyma.19G006100 10.0kb upstream 10.0kb upstream 19706 true Chr19: 563133-582838 Glycine max
Glyma.19G006100 10.0kb upstream 10.0kb upstream 10000 false Chr19: 572839-582838 Glycine max
Glyma.19G006100 10.0kb downstream 10.0kb downstream 19706 true Chr19: 553133-572838 Glycine max
Glyma.19G006100 10.0kb downstream 10.0kb downstream 10000 false Chr19: 553133-563132 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311248 5265 Fabidae View MSA
124062012 5270 Rosid View MSA
123745189 5271 Pentapetalae View MSA
122788994 5272 Eudicot View MSA
122049231 5273 Angiosperm View MSA
121350699 5274 Embryophyte View MSA
123381851 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.5983 0.0 7.4529   Low
cufflinks 8.6025 0.0 30.2783    
cufflinks 6.24343 0.0 19.67    
cufflinks 7.42144 0.0 26.6102    
cufflinks 5.6589 0.0 21.2747    
cufflinks 7.49312 0.0 23.1612    
cufflinks 9.10682 0.0 27.4386    
cufflinks 7.9064 0.0 24.281    
cufflinks 5.3415 0.0 17.4872    
cufflinks 0.776        
cufflinks 0.315        
cufflinks 1.226       High
cufflinks 0.804        
cufflinks 0.717        
cufflinks 0.274       Low
cufflinks 0.391        
cufflinks 0.781        
cufflinks 1.499       High
cufflinks 1.394       High
cufflinks 0.279       Low
cufflinks 0.329        
cufflinks 0.316        
cufflinks 0.501        
cufflinks 0.33        
cufflinks 0.414        
cufflinks 0.769        

0 Strain