Gene : Glyma.02G082200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11472:SF1 - TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT Genomic Order:  822
Name:  ? Glyma.02G082200 Secondary Identifier:  ? PAC:30508830
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G082200 0.5kb upstream 0.5kb upstream 7272 true Chr02: 7145046-7152317 Glycine max
Glyma.02G082200 0.5kb upstream 0.5kb upstream 500 false Chr02: 7145046-7145545 Glycine max
Glyma.02G082200 0.5kb downstream 0.5kb downstream 7272 true Chr02: 7145546-7152817 Glycine max
Glyma.02G082200 0.5kb downstream 0.5kb downstream 500 false Chr02: 7152318-7152817 Glycine max
Glyma.02G082200 1.0kb upstream 1.0kb upstream 7772 true Chr02: 7144546-7152317 Glycine max
Glyma.02G082200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 7144546-7145545 Glycine max
Glyma.02G082200 1.0kb downstream 1.0kb downstream 7772 true Chr02: 7145546-7153317 Glycine max
Glyma.02G082200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 7152318-7153317 Glycine max
Glyma.02G082200 2.0kb upstream 2.0kb upstream 8772 true Chr02: 7143546-7152317 Glycine max
Glyma.02G082200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 7143546-7145545 Glycine max
Glyma.02G082200 2.0kb downstream 2.0kb downstream 8772 true Chr02: 7145546-7154317 Glycine max
Glyma.02G082200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 7152318-7154317 Glycine max
Glyma.02G082200 5.0kb upstream 5.0kb upstream 11772 true Chr02: 7140546-7152317 Glycine max
Glyma.02G082200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 7140546-7145545 Glycine max
Glyma.02G082200 5.0kb downstream 5.0kb downstream 11772 true Chr02: 7145546-7157317 Glycine max
Glyma.02G082200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 7152318-7157317 Glycine max
Glyma.02G082200 10.0kb upstream 10.0kb upstream 16772 true Chr02: 7135546-7152317 Glycine max
Glyma.02G082200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 7135546-7145545 Glycine max
Glyma.02G082200 10.0kb downstream 10.0kb downstream 16772 true Chr02: 7145546-7162317 Glycine max
Glyma.02G082200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 7152318-7162317 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304369 5265 Fabidae View MSA
124062855 5270 Rosid View MSA
123737964 5271 Pentapetalae View MSA
122790118 5272 Eudicot View MSA
122046497 5273 Angiosperm View MSA
121344254 5274 Embryophyte View MSA
123426727 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.95241 0.0 8.63498    
cufflinks 3.22129 0.0 9.33482    
cufflinks 2.08111 0.0 6.385    
cufflinks 3.06155 0.0 8.91966    
cufflinks 3.72152 0.0 10.5695   High
cufflinks 1.31596 0.0 4.30123   Low
cufflinks 2.85251 0.0 8.38768    
cufflinks 3.25247 0.0 9.41509    
cufflinks 2.26802 0.0 6.8731    
cufflinks 1.509        
cufflinks 0.311       Low
cufflinks 1.506        
cufflinks 1.945        
cufflinks 2.411       High
cufflinks 0.482       Low
cufflinks 1.852        
cufflinks 0.725        
cufflinks 2.12        
cufflinks 2.214        
cufflinks 1.827        
cufflinks 0.594       Low
cufflinks 1.754        
cufflinks 2.032        
cufflinks 0.472       Low
cufflinks 1.585        
cufflinks 0.76        

0 Strain