Gene : Glyma.02G088500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31846:SF10 - CHLOROPLASTIC GROUP IIA INTRON SPLICING FACILITATOR CRS1, CHLOROPLASTIC Genomic Order:  885
Name:  ? Glyma.02G088500 Secondary Identifier:  ? PAC:30508862
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G088500 0.5kb upstream 0.5kb upstream 4386 true Chr02: 7782234-7786619 Glycine max
Glyma.02G088500 0.5kb upstream 0.5kb upstream 500 false Chr02: 7782234-7782733 Glycine max
Glyma.02G088500 0.5kb downstream 0.5kb downstream 4386 true Chr02: 7782734-7787119 Glycine max
Glyma.02G088500 0.5kb downstream 0.5kb downstream 500 false Chr02: 7786620-7787119 Glycine max
Glyma.02G088500 1.0kb upstream 1.0kb upstream 4886 true Chr02: 7781734-7786619 Glycine max
Glyma.02G088500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 7781734-7782733 Glycine max
Glyma.02G088500 1.0kb downstream 1.0kb downstream 4886 true Chr02: 7782734-7787619 Glycine max
Glyma.02G088500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 7786620-7787619 Glycine max
Glyma.02G088500 2.0kb upstream 2.0kb upstream 5886 true Chr02: 7780734-7786619 Glycine max
Glyma.02G088500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 7780734-7782733 Glycine max
Glyma.02G088500 2.0kb downstream 2.0kb downstream 5886 true Chr02: 7782734-7788619 Glycine max
Glyma.02G088500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 7786620-7788619 Glycine max
Glyma.02G088500 5.0kb upstream 5.0kb upstream 8886 true Chr02: 7777734-7786619 Glycine max
Glyma.02G088500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 7777734-7782733 Glycine max
Glyma.02G088500 5.0kb downstream 5.0kb downstream 8886 true Chr02: 7782734-7791619 Glycine max
Glyma.02G088500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 7786620-7791619 Glycine max
Glyma.02G088500 10.0kb upstream 10.0kb upstream 13886 true Chr02: 7772734-7786619 Glycine max
Glyma.02G088500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 7772734-7782733 Glycine max
Glyma.02G088500 10.0kb downstream 10.0kb downstream 13886 true Chr02: 7782734-7796619 Glycine max
Glyma.02G088500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 7786620-7796619 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303947 5265 Fabidae View MSA
124065924 5270 Rosid View MSA
123748527 5271 Pentapetalae View MSA
122791188 5272 Eudicot View MSA
122046600 5273 Angiosperm View MSA
121310632 5274 Embryophyte View MSA
123348066 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.033     Low  
cufflinks 0.015     Low  
cufflinks 0.053     Low  
cufflinks 0.029     Low  
cufflinks 0.014     Low  
cufflinks 0.028     Low  
cufflinks 0.061     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.055     Low  
cufflinks 0.062     Low  
cufflinks 0.136       High
cufflinks 0.006     Low Low
cufflinks 0.072     Low  
cufflinks 0.045     Low  
cufflinks 0.01     Low Low
cufflinks 0.067     Low  
cufflinks 0.015     Low  

0 Strain