Gene : Glyma.02G090400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10459:SF38 - DNA LIGASE Genomic Order:  904
Name:  ? Glyma.02G090400 Secondary Identifier:  ? PAC:30506752
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G090400 0.5kb upstream 0.5kb upstream 21138 true Chr02: 7957008-7978145 Glycine max
Glyma.02G090400 0.5kb upstream 0.5kb upstream 500 false Chr02: 7957008-7957507 Glycine max
Glyma.02G090400 0.5kb downstream 0.5kb downstream 21138 true Chr02: 7957508-7978645 Glycine max
Glyma.02G090400 0.5kb downstream 0.5kb downstream 500 false Chr02: 7978146-7978645 Glycine max
Glyma.02G090400 1.0kb upstream 1.0kb upstream 21638 true Chr02: 7956508-7978145 Glycine max
Glyma.02G090400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 7956508-7957507 Glycine max
Glyma.02G090400 1.0kb downstream 1.0kb downstream 21638 true Chr02: 7957508-7979145 Glycine max
Glyma.02G090400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 7978146-7979145 Glycine max
Glyma.02G090400 2.0kb upstream 2.0kb upstream 22638 true Chr02: 7955508-7978145 Glycine max
Glyma.02G090400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 7955508-7957507 Glycine max
Glyma.02G090400 2.0kb downstream 2.0kb downstream 22638 true Chr02: 7957508-7980145 Glycine max
Glyma.02G090400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 7978146-7980145 Glycine max
Glyma.02G090400 5.0kb upstream 5.0kb upstream 25638 true Chr02: 7952508-7978145 Glycine max
Glyma.02G090400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 7952508-7957507 Glycine max
Glyma.02G090400 5.0kb downstream 5.0kb downstream 25638 true Chr02: 7957508-7983145 Glycine max
Glyma.02G090400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 7978146-7983145 Glycine max
Glyma.02G090400 10.0kb upstream 10.0kb upstream 30638 true Chr02: 7947508-7978145 Glycine max
Glyma.02G090400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 7947508-7957507 Glycine max
Glyma.02G090400 10.0kb downstream 10.0kb downstream 30638 true Chr02: 7957508-7988145 Glycine max
Glyma.02G090400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 7978146-7988145 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122241975 5265 Fabidae Singleton cluster - no MSA
124070190 5270 Rosid View MSA
123746296 5271 Pentapetalae View MSA
122793355 5272 Eudicot View MSA
122047557 5273 Angiosperm View MSA
121348285 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0114775 0.0 0.0543031 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.001     Low Low
cufflinks 0.003     Low  
cufflinks 0.009     Low High
cufflinks 0.001     Low Low
cufflinks 0.004     Low  
cufflinks 0.005     Low High
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.004     Low  
cufflinks 0.003     Low  
cufflinks 0.001     Low Low
cufflinks 0.004     Low  
cufflinks 0.003     Low  

0 Strain