Gene : Glyma.02G039400 G. max Wm82.a2.v1
Defline:  (1 of 77) PF03000 - NPH3 family (NPH3) Genomic Order:  394
Name:  ? Glyma.02G039400 Secondary Identifier:  ? PAC:30510540
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G039400 0.5kb upstream 0.5kb upstream 4135 true Chr02: 3684389-3688523 Glycine max
Glyma.02G039400 0.5kb upstream 0.5kb upstream 500 false Chr02: 3688024-3688523 Glycine max
Glyma.02G039400 0.5kb downstream 0.5kb downstream 4135 true Chr02: 3683889-3688023 Glycine max
Glyma.02G039400 0.5kb downstream 0.5kb downstream 500 false Chr02: 3683889-3684388 Glycine max
Glyma.02G039400 1.0kb upstream 1.0kb upstream 4635 true Chr02: 3684389-3689023 Glycine max
Glyma.02G039400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3688024-3689023 Glycine max
Glyma.02G039400 1.0kb downstream 1.0kb downstream 4635 true Chr02: 3683389-3688023 Glycine max
Glyma.02G039400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3683389-3684388 Glycine max
Glyma.02G039400 2.0kb upstream 2.0kb upstream 5635 true Chr02: 3684389-3690023 Glycine max
Glyma.02G039400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3688024-3690023 Glycine max
Glyma.02G039400 2.0kb downstream 2.0kb downstream 5635 true Chr02: 3682389-3688023 Glycine max
Glyma.02G039400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3682389-3684388 Glycine max
Glyma.02G039400 5.0kb upstream 5.0kb upstream 8635 true Chr02: 3684389-3693023 Glycine max
Glyma.02G039400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3688024-3693023 Glycine max
Glyma.02G039400 5.0kb downstream 5.0kb downstream 8635 true Chr02: 3679389-3688023 Glycine max
Glyma.02G039400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3679389-3684388 Glycine max
Glyma.02G039400 10.0kb upstream 10.0kb upstream 13635 true Chr02: 3684389-3698023 Glycine max
Glyma.02G039400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3688024-3698023 Glycine max
Glyma.02G039400 10.0kb downstream 10.0kb downstream 13635 true Chr02: 3674389-3688023 Glycine max
Glyma.02G039400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3674389-3684388 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302184 5265 Fabidae View MSA
124063063 5270 Rosid View MSA
123741197 5271 Pentapetalae View MSA
122790545 5272 Eudicot View MSA
122042377 5273 Angiosperm View MSA
121350883 5274 Embryophyte View MSA
123381921 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.91149 0.0 18.6503    
cufflinks 5.24577 0.0 14.3748    
cufflinks 8.22415 0.0 22.005    
cufflinks 8.20508 0.0 21.9757    
cufflinks 3.46535 0.0 9.90889    
cufflinks 1.93685 0.0 5.97297   Low
cufflinks 2.39777 0.0 7.19056   Low
cufflinks 9.73785 0.0 25.9922   High
cufflinks 2.716 0.0 7.97706    
cufflinks 4.12        
cufflinks 0.663        
cufflinks 5.465        
cufflinks 2.271        
cufflinks 4.181        
cufflinks 0.088       Low
cufflinks 6.349        
cufflinks 0.451       Low
cufflinks 4.317        
cufflinks 5.584        
cufflinks 7.549     High  
cufflinks 0.893        
cufflinks 7.959     High  
cufflinks 5.957        
cufflinks 1.027        
cufflinks 8.042     High  
cufflinks 0.568       Low

0 Strain