Gene : Glyma.02G059000 G. max Wm82.a2.v1
Defline:  (1 of 10) 2.5.1.29 - Geranylgeranyl diphosphate synthase / Geranylgeranyl-PP synthetase Genomic Order:  590
Name:  ? Glyma.02G059000 Secondary Identifier:  ? PAC:30511044
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5120 Glycine max pathologic  
Gmax PWY-5910 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G059000 0.5kb upstream 0.5kb upstream 2145 true Chr02: 5301594-5303738 Glycine max
Glyma.02G059000 0.5kb upstream 0.5kb upstream 500 false Chr02: 5301594-5302093 Glycine max
Glyma.02G059000 0.5kb downstream 0.5kb downstream 2145 true Chr02: 5302094-5304238 Glycine max
Glyma.02G059000 0.5kb downstream 0.5kb downstream 500 false Chr02: 5303739-5304238 Glycine max
Glyma.02G059000 1.0kb upstream 1.0kb upstream 2645 true Chr02: 5301094-5303738 Glycine max
Glyma.02G059000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 5301094-5302093 Glycine max
Glyma.02G059000 1.0kb downstream 1.0kb downstream 2645 true Chr02: 5302094-5304738 Glycine max
Glyma.02G059000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 5303739-5304738 Glycine max
Glyma.02G059000 2.0kb upstream 2.0kb upstream 3645 true Chr02: 5300094-5303738 Glycine max
Glyma.02G059000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 5300094-5302093 Glycine max
Glyma.02G059000 2.0kb downstream 2.0kb downstream 3645 true Chr02: 5302094-5305738 Glycine max
Glyma.02G059000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 5303739-5305738 Glycine max
Glyma.02G059000 5.0kb upstream 5.0kb upstream 6645 true Chr02: 5297094-5303738 Glycine max
Glyma.02G059000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 5297094-5302093 Glycine max
Glyma.02G059000 5.0kb downstream 5.0kb downstream 6645 true Chr02: 5302094-5308738 Glycine max
Glyma.02G059000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 5303739-5308738 Glycine max
Glyma.02G059000 10.0kb upstream 10.0kb upstream 11645 true Chr02: 5292094-5303738 Glycine max
Glyma.02G059000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 5292094-5302093 Glycine max
Glyma.02G059000 10.0kb downstream 10.0kb downstream 11645 true Chr02: 5302094-5313738 Glycine max
Glyma.02G059000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 5303739-5313738 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300633 5265 Fabidae View MSA
124062615 5270 Rosid View MSA
123750127 5271 Pentapetalae View MSA
122794006 5272 Eudicot View MSA
122045672 5273 Angiosperm View MSA
121348382 5274 Embryophyte View MSA
123424390 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.546 0.0 34.0286    
cufflinks 6.85826 0.0 19.6919    
cufflinks 11.8698 0.0 32.5369    
cufflinks 10.9708 0.0 30.0886    
cufflinks 9.82943 0.0 26.9529    
cufflinks 4.49452 0.0 13.5357   Low
cufflinks 9.10439 0.0 25.2052    
cufflinks 17.1627 0.0 45.9836   High
cufflinks 5.99415 0.0 17.3904   Low
cufflinks 5.769        
cufflinks 0.376       Low
cufflinks 4.318        
cufflinks 2.398        
cufflinks 3.072        
cufflinks 1.181        
cufflinks 5.04        
cufflinks 4.75        
cufflinks 5.167        
cufflinks 4.455        
cufflinks 3.766        
cufflinks 0.484       Low
cufflinks 4.873        
cufflinks 6.035        
cufflinks 0.688       Low
cufflinks 3.39        
cufflinks 1.052        

0 Strain