Gene : Glyma.02G012500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR33921:SF2 - CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED Genomic Order:  125
Name:  ? Glyma.02G012500 Secondary Identifier:  ? PAC:30510697
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G012500 0.5kb upstream 0.5kb upstream 1231 true Chr02: 1121129-1122359 Glycine max
Glyma.02G012500 0.5kb upstream 0.5kb upstream 500 false Chr02: 1121129-1121628 Glycine max
Glyma.02G012500 0.5kb downstream 0.5kb downstream 1231 true Chr02: 1121629-1122859 Glycine max
Glyma.02G012500 0.5kb downstream 0.5kb downstream 500 false Chr02: 1122360-1122859 Glycine max
Glyma.02G012500 1.0kb upstream 1.0kb upstream 1731 true Chr02: 1120629-1122359 Glycine max
Glyma.02G012500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 1120629-1121628 Glycine max
Glyma.02G012500 1.0kb downstream 1.0kb downstream 1731 true Chr02: 1121629-1123359 Glycine max
Glyma.02G012500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 1122360-1123359 Glycine max
Glyma.02G012500 2.0kb upstream 2.0kb upstream 2731 true Chr02: 1119629-1122359 Glycine max
Glyma.02G012500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 1119629-1121628 Glycine max
Glyma.02G012500 2.0kb downstream 2.0kb downstream 2731 true Chr02: 1121629-1124359 Glycine max
Glyma.02G012500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 1122360-1124359 Glycine max
Glyma.02G012500 5.0kb upstream 5.0kb upstream 5731 true Chr02: 1116629-1122359 Glycine max
Glyma.02G012500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 1116629-1121628 Glycine max
Glyma.02G012500 5.0kb downstream 5.0kb downstream 5731 true Chr02: 1121629-1127359 Glycine max
Glyma.02G012500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 1122360-1127359 Glycine max
Glyma.02G012500 10.0kb upstream 10.0kb upstream 10731 true Chr02: 1111629-1122359 Glycine max
Glyma.02G012500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 1111629-1121628 Glycine max
Glyma.02G012500 10.0kb downstream 10.0kb downstream 10731 true Chr02: 1121629-1132359 Glycine max
Glyma.02G012500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 1122360-1132359 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314753 5265 Fabidae View MSA
124070241 5270 Rosid View MSA
123742696 5271 Pentapetalae View MSA
122795504 5272 Eudicot View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 118.713 0.0 332.945 High High
cufflinks 0.69044 0.0 2.62914    
cufflinks 22.3011 0.0 61.2512 High High
cufflinks 0.0672835 0.0 0.284863 Low Low
cufflinks 0.122464 0.0 0.49749 Low  
cufflinks 0.115106 0.0 0.470614 Low  
cufflinks 6.81793 0.0 21.3581    
cufflinks 0.220244 0.0 0.876925 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 0.054        
cufflinks 5.996        
cufflinks 0.023     Low  
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 16.391     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low  
cufflinks 0.079     Low  
cufflinks 24.471     High High
cufflinks 0.024     Low  
cufflinks 20.959     High High
cufflinks 10.782     High High
cufflinks 0.028     Low  
cufflinks 18.259     High High
cufflinks 0.0     Not Expressed Not Expressed

0 Strain