Gene : Glyma.02G028700 G. max Wm82.a2.v1
Defline:  (1 of 6) 3.4.24.7 - Interstitial collagenase / Vertebrate collagenase Genomic Order:  287
Name:  ? Glyma.02G028700 Secondary Identifier:  ? PAC:30507224
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G028700 0.5kb upstream 0.5kb upstream 12273 true Chr02: 2603749-2616021 Glycine max
Glyma.02G028700 0.5kb upstream 0.5kb upstream 500 false Chr02: 2603749-2604248 Glycine max
Glyma.02G028700 0.5kb downstream 0.5kb downstream 12273 true Chr02: 2604249-2616521 Glycine max
Glyma.02G028700 0.5kb downstream 0.5kb downstream 500 false Chr02: 2616022-2616521 Glycine max
Glyma.02G028700 1.0kb upstream 1.0kb upstream 12773 true Chr02: 2603249-2616021 Glycine max
Glyma.02G028700 1.0kb upstream 1.0kb upstream 1000 false Chr02: 2603249-2604248 Glycine max
Glyma.02G028700 1.0kb downstream 1.0kb downstream 12773 true Chr02: 2604249-2617021 Glycine max
Glyma.02G028700 1.0kb downstream 1.0kb downstream 1000 false Chr02: 2616022-2617021 Glycine max
Glyma.02G028700 2.0kb upstream 2.0kb upstream 13773 true Chr02: 2602249-2616021 Glycine max
Glyma.02G028700 2.0kb upstream 2.0kb upstream 2000 false Chr02: 2602249-2604248 Glycine max
Glyma.02G028700 2.0kb downstream 2.0kb downstream 13773 true Chr02: 2604249-2618021 Glycine max
Glyma.02G028700 2.0kb downstream 2.0kb downstream 2000 false Chr02: 2616022-2618021 Glycine max
Glyma.02G028700 5.0kb upstream 5.0kb upstream 16773 true Chr02: 2599249-2616021 Glycine max
Glyma.02G028700 5.0kb upstream 5.0kb upstream 5000 false Chr02: 2599249-2604248 Glycine max
Glyma.02G028700 5.0kb downstream 5.0kb downstream 16773 true Chr02: 2604249-2621021 Glycine max
Glyma.02G028700 5.0kb downstream 5.0kb downstream 5000 false Chr02: 2616022-2621021 Glycine max
Glyma.02G028700 10.0kb upstream 10.0kb upstream 21773 true Chr02: 2594249-2616021 Glycine max
Glyma.02G028700 10.0kb upstream 10.0kb upstream 10000 false Chr02: 2594249-2604248 Glycine max
Glyma.02G028700 10.0kb downstream 10.0kb downstream 21773 true Chr02: 2604249-2626021 Glycine max
Glyma.02G028700 10.0kb downstream 10.0kb downstream 10000 false Chr02: 2616022-2626021 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121656193 5273 Angiosperm View MSA
122297787 5265 Fabidae View MSA
124036152 5270 Rosid View MSA
123609540 5271 Pentapetalae View MSA
122644188 5272 Eudicot View MSA
120928278 5274 Embryophyte View MSA
122968891 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1524.96 1518.01 1531.92 High High
cufflinks 3.56337 0.0 12.3701    
cufflinks 11.2848 0.0 33.6539    
cufflinks 1.03966 0.0 5.22151   Low
cufflinks 19.1561 0.0 59.0708    
cufflinks 10.846 0.0 32.2238    
cufflinks 0.511116 0.0 2.29416   Low
cufflinks 11.2586 0.0 33.4379    
cufflinks 19.6382 0.0 60.6555 High  
cufflinks 15.173     High  
cufflinks 13.411     High  
cufflinks 2.816        
cufflinks 5.74        
cufflinks 6.038        
cufflinks 16.174     High  
cufflinks 5.976        
cufflinks 7.112     High  
cufflinks 0.826       Low
cufflinks 0.945       Low
cufflinks 2.557        
cufflinks 33.126     High High
cufflinks 5.67        
cufflinks 2.671        
cufflinks 62.927     High High
cufflinks 2.751        
cufflinks 20.633     High  

0 Strain