Gene : Glyma.02G028200 G. max Wm82.a2.v1
Defline:  (1 of 6) 3.4.24.7 - Interstitial collagenase / Vertebrate collagenase Genomic Order:  282
Name:  ? Glyma.02G028200 Secondary Identifier:  ? PAC:30510445
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G028200 0.5kb upstream 0.5kb upstream 2089 true Chr02: 2556165-2558253 Glycine max
Glyma.02G028200 0.5kb upstream 0.5kb upstream 500 false Chr02: 2556165-2556664 Glycine max
Glyma.02G028200 0.5kb downstream 0.5kb downstream 2089 true Chr02: 2556665-2558753 Glycine max
Glyma.02G028200 0.5kb downstream 0.5kb downstream 500 false Chr02: 2558254-2558753 Glycine max
Glyma.02G028200 1.0kb upstream 1.0kb upstream 2589 true Chr02: 2555665-2558253 Glycine max
Glyma.02G028200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 2555665-2556664 Glycine max
Glyma.02G028200 1.0kb downstream 1.0kb downstream 2589 true Chr02: 2556665-2559253 Glycine max
Glyma.02G028200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 2558254-2559253 Glycine max
Glyma.02G028200 2.0kb upstream 2.0kb upstream 3589 true Chr02: 2554665-2558253 Glycine max
Glyma.02G028200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 2554665-2556664 Glycine max
Glyma.02G028200 2.0kb downstream 2.0kb downstream 3589 true Chr02: 2556665-2560253 Glycine max
Glyma.02G028200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 2558254-2560253 Glycine max
Glyma.02G028200 5.0kb upstream 5.0kb upstream 6589 true Chr02: 2551665-2558253 Glycine max
Glyma.02G028200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 2551665-2556664 Glycine max
Glyma.02G028200 5.0kb downstream 5.0kb downstream 6589 true Chr02: 2556665-2563253 Glycine max
Glyma.02G028200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 2558254-2563253 Glycine max
Glyma.02G028200 10.0kb upstream 10.0kb upstream 11589 true Chr02: 2546665-2558253 Glycine max
Glyma.02G028200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 2546665-2556664 Glycine max
Glyma.02G028200 10.0kb downstream 10.0kb downstream 11589 true Chr02: 2556665-2568253 Glycine max
Glyma.02G028200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 2558254-2568253 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121656193 5273 Angiosperm View MSA
122297787 5265 Fabidae View MSA
124036152 5270 Rosid View MSA
123609540 5271 Pentapetalae View MSA
122644188 5272 Eudicot View MSA
120928278 5274 Embryophyte View MSA
122968891 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.16 0.0 40.7606    
cufflinks 494.865 0.0 2241.32 High High
cufflinks 33.715 0.0 90.6105 High  
cufflinks 453.999 0.0 1992.77 High High
cufflinks 0.124525 0.0 0.492844 Low  
cufflinks 3.46099 0.0 10.8618    
cufflinks 0.00124811 0.0 0.00979813 Low Low
cufflinks 38.4918 0.0 104.284 High  
cufflinks 0.114576 0.0 0.454844 Low  
cufflinks 970.368     High High
cufflinks 0.013     Low Low
cufflinks 87.68     High  
cufflinks 0.293        
cufflinks 0.187        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 49.0     High  
cufflinks 0.053     Low Low
cufflinks 109.343     High  
cufflinks 1281.549     High High
cufflinks 7.093     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 24.048     High  
cufflinks 1223.386     High High
cufflinks 0.037     Low Low
cufflinks 26.338     High  
cufflinks 0.011     Low Low

0 Strain