Gene : Glyma.02G032800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11451:SF5 - THREONINE--TRNA LIGASE 1, CYTOPLASMIC-RELATED Genomic Order:  328
Name:  ? Glyma.02G032800 Secondary Identifier:  ? PAC:30508748
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G032800 0.5kb upstream 0.5kb upstream 11681 true Chr02: 3029017-3040697 Glycine max
Glyma.02G032800 0.5kb upstream 0.5kb upstream 500 false Chr02: 3040198-3040697 Glycine max
Glyma.02G032800 0.5kb downstream 0.5kb downstream 11681 true Chr02: 3028517-3040197 Glycine max
Glyma.02G032800 0.5kb downstream 0.5kb downstream 500 false Chr02: 3028517-3029016 Glycine max
Glyma.02G032800 1.0kb upstream 1.0kb upstream 12181 true Chr02: 3029017-3041197 Glycine max
Glyma.02G032800 1.0kb upstream 1.0kb upstream 1000 false Chr02: 3040198-3041197 Glycine max
Glyma.02G032800 1.0kb downstream 1.0kb downstream 12181 true Chr02: 3028017-3040197 Glycine max
Glyma.02G032800 1.0kb downstream 1.0kb downstream 1000 false Chr02: 3028017-3029016 Glycine max
Glyma.02G032800 2.0kb upstream 2.0kb upstream 13181 true Chr02: 3029017-3042197 Glycine max
Glyma.02G032800 2.0kb upstream 2.0kb upstream 2000 false Chr02: 3040198-3042197 Glycine max
Glyma.02G032800 2.0kb downstream 2.0kb downstream 13181 true Chr02: 3027017-3040197 Glycine max
Glyma.02G032800 2.0kb downstream 2.0kb downstream 2000 false Chr02: 3027017-3029016 Glycine max
Glyma.02G032800 5.0kb upstream 5.0kb upstream 16181 true Chr02: 3029017-3045197 Glycine max
Glyma.02G032800 5.0kb upstream 5.0kb upstream 5000 false Chr02: 3040198-3045197 Glycine max
Glyma.02G032800 5.0kb downstream 5.0kb downstream 16181 true Chr02: 3024017-3040197 Glycine max
Glyma.02G032800 5.0kb downstream 5.0kb downstream 5000 false Chr02: 3024017-3029016 Glycine max
Glyma.02G032800 10.0kb upstream 10.0kb upstream 21181 true Chr02: 3029017-3050197 Glycine max
Glyma.02G032800 10.0kb upstream 10.0kb upstream 10000 false Chr02: 3040198-3050197 Glycine max
Glyma.02G032800 10.0kb downstream 10.0kb downstream 21181 true Chr02: 3019017-3040197 Glycine max
Glyma.02G032800 10.0kb downstream 10.0kb downstream 10000 false Chr02: 3019017-3029016 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302424 5265 Fabidae View MSA
124061778 5270 Rosid View MSA
123740183 5271 Pentapetalae View MSA
122787371 5272 Eudicot View MSA
122045647 5273 Angiosperm View MSA
123429084 5275 Viridiplantae View MSA
121345438 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.8592 0.0 48.2098    
cufflinks 21.4972 0.0 67.7883 High  
cufflinks 10.3202 0.0 30.8917   Low
cufflinks 23.3211 0.0 74.5655 High  
cufflinks 24.263 0.0 78.4027 High  
cufflinks 15.0101 0.0 45.3181    
cufflinks 23.4216 0.0 74.898 High  
cufflinks 22.2002 0.0 70.4928 High  
cufflinks 18.958 0.0 58.826    
cufflinks 5.259        
cufflinks 1.018       Low
cufflinks 3.944        
cufflinks 7.209     High High
cufflinks 9.043     High High
cufflinks 1.216       Low
cufflinks 3.236        
cufflinks 2.906        
cufflinks 4.938        
cufflinks 5.774        
cufflinks 2.494        
cufflinks 1.538       Low
cufflinks 2.741        
cufflinks 4.059        
cufflinks 1.232       Low
cufflinks 2.662        
cufflinks 2.96        

0 Strain