Gene : Glyma.02G240200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  2402
Name:  ? Glyma.02G240200 Secondary Identifier:  ? PAC:30506495
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-6475 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G240200 0.5kb upstream 0.5kb upstream 6262 true Chr02: 42872399-42878660 Glycine max
Glyma.02G240200 0.5kb upstream 0.5kb upstream 500 false Chr02: 42878161-42878660 Glycine max
Glyma.02G240200 0.5kb downstream 0.5kb downstream 6262 true Chr02: 42871899-42878160 Glycine max
Glyma.02G240200 0.5kb downstream 0.5kb downstream 500 false Chr02: 42871899-42872398 Glycine max
Glyma.02G240200 1.0kb upstream 1.0kb upstream 6762 true Chr02: 42872399-42879160 Glycine max
Glyma.02G240200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 42878161-42879160 Glycine max
Glyma.02G240200 1.0kb downstream 1.0kb downstream 6762 true Chr02: 42871399-42878160 Glycine max
Glyma.02G240200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 42871399-42872398 Glycine max
Glyma.02G240200 2.0kb upstream 2.0kb upstream 7762 true Chr02: 42872399-42880160 Glycine max
Glyma.02G240200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 42878161-42880160 Glycine max
Glyma.02G240200 2.0kb downstream 2.0kb downstream 7762 true Chr02: 42870399-42878160 Glycine max
Glyma.02G240200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 42870399-42872398 Glycine max
Glyma.02G240200 5.0kb upstream 5.0kb upstream 10762 true Chr02: 42872399-42883160 Glycine max
Glyma.02G240200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 42878161-42883160 Glycine max
Glyma.02G240200 5.0kb downstream 5.0kb downstream 10762 true Chr02: 42867399-42878160 Glycine max
Glyma.02G240200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 42867399-42872398 Glycine max
Glyma.02G240200 10.0kb upstream 10.0kb upstream 15762 true Chr02: 42872399-42888160 Glycine max
Glyma.02G240200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 42878161-42888160 Glycine max
Glyma.02G240200 10.0kb downstream 10.0kb downstream 15762 true Chr02: 42862399-42878160 Glycine max
Glyma.02G240200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 42862399-42872398 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122301582 5265 Fabidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.9588 0.0 188.867 High High
cufflinks 38.4278 0.0 188.608 High High
cufflinks 11.6382 0.0 47.8692    
cufflinks 17.9261 0.0 72.9601    
cufflinks 6.22592 0.0 27.7723    
cufflinks 3.75962 0.0 17.7341   Low
cufflinks 17.0631 0.0 75.0224    
cufflinks 29.043 0.0 133.65 High  
cufflinks 3.46512 0.0 18.3592   Low
cufflinks 2.122        
cufflinks 0.122        
cufflinks 1.285        
cufflinks 0.112        
cufflinks 0.109        
cufflinks 0.07       Low
cufflinks 1.998        
cufflinks 0.227        
cufflinks 1.762        
cufflinks 2.768       High
cufflinks 2.004        
cufflinks 0.065       Low
cufflinks 2.471       High
cufflinks 1.926        
cufflinks 0.071       Low
cufflinks 1.999        
cufflinks 0.11        

0 Strain