Gene : Glyma.18G296600 G. max Wm82.a2.v1
Defline:  (1 of 5) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  2966
Name:  ? Glyma.18G296600 Secondary Identifier:  ? PAC:30557028
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6809 Glycine max pathologic  
Gmax PWY-695 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.18G296600 0.5kb upstream 0.5kb upstream 4244 true Chr18: 57386246-57390489 Glycine max
Glyma.18G296600 0.5kb upstream 0.5kb upstream 500 false Chr18: 57389990-57390489 Glycine max
Glyma.18G296600 0.5kb downstream 0.5kb downstream 4244 true Chr18: 57385746-57389989 Glycine max
Glyma.18G296600 0.5kb downstream 0.5kb downstream 500 false Chr18: 57385746-57386245 Glycine max
Glyma.18G296600 1.0kb upstream 1.0kb upstream 4744 true Chr18: 57386246-57390989 Glycine max
Glyma.18G296600 1.0kb upstream 1.0kb upstream 1000 false Chr18: 57389990-57390989 Glycine max
Glyma.18G296600 1.0kb downstream 1.0kb downstream 4744 true Chr18: 57385246-57389989 Glycine max
Glyma.18G296600 1.0kb downstream 1.0kb downstream 1000 false Chr18: 57385246-57386245 Glycine max
Glyma.18G296600 2.0kb upstream 2.0kb upstream 5744 true Chr18: 57386246-57391989 Glycine max
Glyma.18G296600 2.0kb upstream 2.0kb upstream 2000 false Chr18: 57389990-57391989 Glycine max
Glyma.18G296600 2.0kb downstream 2.0kb downstream 5744 true Chr18: 57384246-57389989 Glycine max
Glyma.18G296600 2.0kb downstream 2.0kb downstream 2000 false Chr18: 57384246-57386245 Glycine max
Glyma.18G296600 5.0kb upstream 5.0kb upstream 8744 true Chr18: 57386246-57394989 Glycine max
Glyma.18G296600 5.0kb upstream 5.0kb upstream 5000 false Chr18: 57389990-57394989 Glycine max
Glyma.18G296600 5.0kb downstream 5.0kb downstream 8744 true Chr18: 57381246-57389989 Glycine max
Glyma.18G296600 5.0kb downstream 5.0kb downstream 5000 false Chr18: 57381246-57386245 Glycine max
Glyma.18G296600 10.0kb upstream 10.0kb upstream 13744 true Chr18: 57386246-57399989 Glycine max
Glyma.18G296600 10.0kb upstream 10.0kb upstream 10000 false Chr18: 57389990-57399989 Glycine max
Glyma.18G296600 10.0kb downstream 10.0kb downstream 13744 true Chr18: 57376246-57389989 Glycine max
Glyma.18G296600 10.0kb downstream 10.0kb downstream 10000 false Chr18: 57376246-57386245 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312106 5265 Fabidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.68334 0.0 14.4712   Low
cufflinks 4.99557 0.0 25.2178    
cufflinks 1.86793 0.0 12.7843   Low
cufflinks 3.61359 0.0 19.7801    
cufflinks 9.51875 0.0 40.0542   High
cufflinks 8.82274 0.0 37.0615    
cufflinks 7.83814 0.0 34.5378    
cufflinks 5.89552 0.0 23.2724    
cufflinks 6.52637 0.0 30.1197    
cufflinks 0.423        
cufflinks 0.068       Low
cufflinks 0.375        
cufflinks 1.701       High
cufflinks 2.69       High
cufflinks 0.049     Low Low
cufflinks 0.72        
cufflinks 0.171        
cufflinks 0.819        
cufflinks 0.469        
cufflinks 0.691        
cufflinks 0.101       Low
cufflinks 0.726        
cufflinks 1.355       High
cufflinks 0.08       Low
cufflinks 0.795        
cufflinks 0.162        

0 Strain