Gene : Glyma.19G028400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11468:SF8 - ALPHA-GLUCAN PHOSPHORYLASE 1 Genomic Order:  284
Name:  ? Glyma.19G028400 Secondary Identifier:  ? PAC:30514998
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7238 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G028400 0.5kb upstream 0.5kb upstream 11690 true Chr19: 3543324-3555013 Glycine max
Glyma.19G028400 0.5kb upstream 0.5kb upstream 500 false Chr19: 3543324-3543823 Glycine max
Glyma.19G028400 0.5kb downstream 0.5kb downstream 11690 true Chr19: 3543824-3555513 Glycine max
Glyma.19G028400 0.5kb downstream 0.5kb downstream 500 false Chr19: 3555014-3555513 Glycine max
Glyma.19G028400 1.0kb upstream 1.0kb upstream 12190 true Chr19: 3542824-3555013 Glycine max
Glyma.19G028400 1.0kb upstream 1.0kb upstream 1000 false Chr19: 3542824-3543823 Glycine max
Glyma.19G028400 1.0kb downstream 1.0kb downstream 12190 true Chr19: 3543824-3556013 Glycine max
Glyma.19G028400 1.0kb downstream 1.0kb downstream 1000 false Chr19: 3555014-3556013 Glycine max
Glyma.19G028400 2.0kb upstream 2.0kb upstream 13190 true Chr19: 3541824-3555013 Glycine max
Glyma.19G028400 2.0kb upstream 2.0kb upstream 2000 false Chr19: 3541824-3543823 Glycine max
Glyma.19G028400 2.0kb downstream 2.0kb downstream 13190 true Chr19: 3543824-3557013 Glycine max
Glyma.19G028400 2.0kb downstream 2.0kb downstream 2000 false Chr19: 3555014-3557013 Glycine max
Glyma.19G028400 5.0kb upstream 5.0kb upstream 16190 true Chr19: 3538824-3555013 Glycine max
Glyma.19G028400 5.0kb upstream 5.0kb upstream 5000 false Chr19: 3538824-3543823 Glycine max
Glyma.19G028400 5.0kb downstream 5.0kb downstream 16190 true Chr19: 3543824-3560013 Glycine max
Glyma.19G028400 5.0kb downstream 5.0kb downstream 5000 false Chr19: 3555014-3560013 Glycine max
Glyma.19G028400 10.0kb upstream 10.0kb upstream 21190 true Chr19: 3533824-3555013 Glycine max
Glyma.19G028400 10.0kb upstream 10.0kb upstream 10000 false Chr19: 3533824-3543823 Glycine max
Glyma.19G028400 10.0kb downstream 10.0kb downstream 21190 true Chr19: 3543824-3565013 Glycine max
Glyma.19G028400 10.0kb downstream 10.0kb downstream 10000 false Chr19: 3555014-3565013 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299436 5265 Fabidae View MSA
124071447 5270 Rosid View MSA
123744201 5271 Pentapetalae View MSA
122788131 5272 Eudicot View MSA
122045780 5273 Angiosperm View MSA
121351120 5274 Embryophyte View MSA
123425744 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.0048 0.0 55.89    
cufflinks 48.2081 0.0 153.041 High  
cufflinks 14.0535 0.0 38.208   Low
cufflinks 54.8176 0.0 178.996 High  
cufflinks 66.21 0.0 224.597 High  
cufflinks 12.6371 0.0 34.0994   Low
cufflinks 107.555 0.0 412.888 High High
cufflinks 135.335 0.0 561.52 High High
cufflinks 19.5973 0.0 54.6394 High  
cufflinks 22.717     High High
cufflinks 0.305       Low
cufflinks 14.562     High  
cufflinks 4.913        
cufflinks 4.55        
cufflinks 2.069        
cufflinks 11.34     High  
cufflinks 1.769        
cufflinks 27.732     High High
cufflinks 13.659     High  
cufflinks 11.231     High  
cufflinks 0.956       Low
cufflinks 10.893     High  
cufflinks 9.161     High  
cufflinks 0.483       Low
cufflinks 11.201     High  
cufflinks 1.559        

0 Strain