Gene : Glyma.02G201400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10555:SF122 - SORTING NEXIN 1 Genomic Order:  2014
Name:  ? Glyma.02G201400 Secondary Identifier:  ? PAC:30510887
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G201400 0.5kb upstream 0.5kb upstream 8358 true Chr02: 38538894-38547251 Glycine max
Glyma.02G201400 0.5kb upstream 0.5kb upstream 500 false Chr02: 38538894-38539393 Glycine max
Glyma.02G201400 0.5kb downstream 0.5kb downstream 8358 true Chr02: 38539394-38547751 Glycine max
Glyma.02G201400 0.5kb downstream 0.5kb downstream 500 false Chr02: 38547252-38547751 Glycine max
Glyma.02G201400 1.0kb upstream 1.0kb upstream 8858 true Chr02: 38538394-38547251 Glycine max
Glyma.02G201400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 38538394-38539393 Glycine max
Glyma.02G201400 1.0kb downstream 1.0kb downstream 8858 true Chr02: 38539394-38548251 Glycine max
Glyma.02G201400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 38547252-38548251 Glycine max
Glyma.02G201400 2.0kb upstream 2.0kb upstream 9858 true Chr02: 38537394-38547251 Glycine max
Glyma.02G201400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 38537394-38539393 Glycine max
Glyma.02G201400 2.0kb downstream 2.0kb downstream 9858 true Chr02: 38539394-38549251 Glycine max
Glyma.02G201400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 38547252-38549251 Glycine max
Glyma.02G201400 5.0kb upstream 5.0kb upstream 12858 true Chr02: 38534394-38547251 Glycine max
Glyma.02G201400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 38534394-38539393 Glycine max
Glyma.02G201400 5.0kb downstream 5.0kb downstream 12858 true Chr02: 38539394-38552251 Glycine max
Glyma.02G201400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 38547252-38552251 Glycine max
Glyma.02G201400 10.0kb upstream 10.0kb upstream 17858 true Chr02: 38529394-38547251 Glycine max
Glyma.02G201400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 38529394-38539393 Glycine max
Glyma.02G201400 10.0kb downstream 10.0kb downstream 17858 true Chr02: 38539394-38557251 Glycine max
Glyma.02G201400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 38547252-38557251 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300611 5265 Fabidae View MSA
124066249 5270 Rosid View MSA
123741756 5271 Pentapetalae View MSA
122792565 5272 Eudicot View MSA
122045293 5273 Angiosperm View MSA
121345603 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.3103 0.0 35.6192    
cufflinks 8.6461 0.0 23.5997   Low
cufflinks 6.67793 0.0 18.5774   Low
cufflinks 11.7837 0.0 31.6362    
cufflinks 14.3134 0.0 38.2452    
cufflinks 15.1996 0.0 40.5736    
cufflinks 23.6035 0.0 63.282 High High
cufflinks 11.333 0.0 30.4729    
cufflinks 13.5862 0.0 36.3363    
cufflinks 2.598        
cufflinks 1.135       Low
cufflinks 2.018        
cufflinks 3.457       High
cufflinks 3.849       High
cufflinks 2.206        
cufflinks 1.706        
cufflinks 1.513        
cufflinks 2.345        
cufflinks 2.4        
cufflinks 1.444        
cufflinks 1.602        
cufflinks 1.529        
cufflinks 2.039        
cufflinks 1.312       Low
cufflinks 1.487        
cufflinks 1.675        

0 Strain