Gene : Glyma.02G217100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11680:SF12 - SERINE HYDROXYMETHYLTRANSFERASE 2, MITOCHONDRIAL Genomic Order:  2171
Name:  ? Glyma.02G217100 Secondary Identifier:  ? PAC:30506572
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYSYN-PWY Glycine max pathologic  
Gmax PWY-2161 Glycine max pathologic  
Gmax PWY-3841 Glycine max pathologic  
Gmax SER-GLYSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G217100 0.5kb upstream 0.5kb upstream 7943 true Chr02: 40401876-40409818 Glycine max
Glyma.02G217100 0.5kb upstream 0.5kb upstream 500 false Chr02: 40401876-40402375 Glycine max
Glyma.02G217100 0.5kb downstream 0.5kb downstream 7943 true Chr02: 40402376-40410318 Glycine max
Glyma.02G217100 0.5kb downstream 0.5kb downstream 500 false Chr02: 40409819-40410318 Glycine max
Glyma.02G217100 1.0kb upstream 1.0kb upstream 8443 true Chr02: 40401376-40409818 Glycine max
Glyma.02G217100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 40401376-40402375 Glycine max
Glyma.02G217100 1.0kb downstream 1.0kb downstream 8443 true Chr02: 40402376-40410818 Glycine max
Glyma.02G217100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 40409819-40410818 Glycine max
Glyma.02G217100 2.0kb upstream 2.0kb upstream 9443 true Chr02: 40400376-40409818 Glycine max
Glyma.02G217100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 40400376-40402375 Glycine max
Glyma.02G217100 2.0kb downstream 2.0kb downstream 9443 true Chr02: 40402376-40411818 Glycine max
Glyma.02G217100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 40409819-40411818 Glycine max
Glyma.02G217100 5.0kb upstream 5.0kb upstream 12443 true Chr02: 40397376-40409818 Glycine max
Glyma.02G217100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 40397376-40402375 Glycine max
Glyma.02G217100 5.0kb downstream 5.0kb downstream 12443 true Chr02: 40402376-40414818 Glycine max
Glyma.02G217100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 40409819-40414818 Glycine max
Glyma.02G217100 10.0kb upstream 10.0kb upstream 17443 true Chr02: 40392376-40409818 Glycine max
Glyma.02G217100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 40392376-40402375 Glycine max
Glyma.02G217100 10.0kb downstream 10.0kb downstream 17443 true Chr02: 40402376-40419818 Glycine max
Glyma.02G217100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 40409819-40419818 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.77506 0.0 24.8407   Low
cufflinks 17.7421 0.0 61.6325    
cufflinks 9.74496 0.0 39.5457   Low
cufflinks 32.0266 0.0 144.386 High  
cufflinks 31.6033 0.0 118.035 High  
cufflinks 22.0687 0.0 78.3891    
cufflinks 19.7734 0.0 69.7154    
cufflinks 30.6889 0.0 115.448 High  
cufflinks 29.47 0.0 108.611 High  
cufflinks 4.002       High
cufflinks 0.563       Low
cufflinks 1.55        
cufflinks 3.577       High
cufflinks 4.032       High
cufflinks 1.388        
cufflinks 0.866        
cufflinks 1.313        
cufflinks 3.778       High
cufflinks 2.422        
cufflinks 0.441       Low
cufflinks 0.973        
cufflinks 0.637        
cufflinks 0.717        
cufflinks 0.86        
cufflinks 0.559       Low
cufflinks 1.462        

0 Strain