Gene : Glyma.02G175400 G. max Wm82.a2.v1
Defline:  (1 of 12) PTHR12290 - CORNICHON-RELATED Genomic Order:  1754
Name:  ? Glyma.02G175400 Secondary Identifier:  ? PAC:30510317
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G175400 0.5kb upstream 0.5kb upstream 12369 true Chr02: 28159713-28172081 Glycine max
Glyma.02G175400 0.5kb upstream 0.5kb upstream 500 false Chr02: 28171582-28172081 Glycine max
Glyma.02G175400 0.5kb downstream 0.5kb downstream 12369 true Chr02: 28159213-28171581 Glycine max
Glyma.02G175400 0.5kb downstream 0.5kb downstream 500 false Chr02: 28159213-28159712 Glycine max
Glyma.02G175400 1.0kb upstream 1.0kb upstream 12869 true Chr02: 28159713-28172581 Glycine max
Glyma.02G175400 1.0kb upstream 1.0kb upstream 1000 false Chr02: 28171582-28172581 Glycine max
Glyma.02G175400 1.0kb downstream 1.0kb downstream 12869 true Chr02: 28158713-28171581 Glycine max
Glyma.02G175400 1.0kb downstream 1.0kb downstream 1000 false Chr02: 28158713-28159712 Glycine max
Glyma.02G175400 2.0kb upstream 2.0kb upstream 13869 true Chr02: 28159713-28173581 Glycine max
Glyma.02G175400 2.0kb upstream 2.0kb upstream 2000 false Chr02: 28171582-28173581 Glycine max
Glyma.02G175400 2.0kb downstream 2.0kb downstream 13869 true Chr02: 28157713-28171581 Glycine max
Glyma.02G175400 2.0kb downstream 2.0kb downstream 2000 false Chr02: 28157713-28159712 Glycine max
Glyma.02G175400 5.0kb upstream 5.0kb upstream 16869 true Chr02: 28159713-28176581 Glycine max
Glyma.02G175400 5.0kb upstream 5.0kb upstream 5000 false Chr02: 28171582-28176581 Glycine max
Glyma.02G175400 5.0kb downstream 5.0kb downstream 16869 true Chr02: 28154713-28171581 Glycine max
Glyma.02G175400 5.0kb downstream 5.0kb downstream 5000 false Chr02: 28154713-28159712 Glycine max
Glyma.02G175400 10.0kb upstream 10.0kb upstream 21869 true Chr02: 28159713-28181581 Glycine max
Glyma.02G175400 10.0kb upstream 10.0kb upstream 10000 false Chr02: 28171582-28181581 Glycine max
Glyma.02G175400 10.0kb downstream 10.0kb downstream 21869 true Chr02: 28149713-28171581 Glycine max
Glyma.02G175400 10.0kb downstream 10.0kb downstream 10000 false Chr02: 28149713-28159712 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311032 5265 Fabidae View MSA
124067439 5270 Rosid View MSA
123752732 5271 Pentapetalae View MSA
122796851 5272 Eudicot View MSA
122045878 5273 Angiosperm View MSA
121348735 5274 Embryophyte View MSA
123427918 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.99922 0.0 10.5399    
cufflinks 6.6853 0.0 21.3811    
cufflinks 1.82234 0.0 6.62982   Low
cufflinks 4.28706 0.0 14.508    
cufflinks 5.44472 0.0 17.8283    
cufflinks 4.66306 0.0 15.6377    
cufflinks 5.21008 0.0 17.2185    
cufflinks 5.79246 0.0 18.8527    
cufflinks 6.4803 0.0 20.7443    
cufflinks 0.36        
cufflinks 0.111       Low
cufflinks 0.288        
cufflinks 0.498       High
cufflinks 0.598       High
cufflinks 0.104       Low
cufflinks 0.237        
cufflinks 0.211        
cufflinks 0.329        
cufflinks 0.49       High
cufflinks 0.223        
cufflinks 0.135       Low
cufflinks 0.301        
cufflinks 0.291        
cufflinks 0.198        
cufflinks 0.202        
cufflinks 0.132       Low

0 Strain