Gene : Glyma.19G018000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11142:SF4 - TRNA PSEUDOURIDINE SYNTHASE A, MITOCHONDRIAL Genomic Order:  180
Name:  ? Glyma.19G018000 Secondary Identifier:  ? PAC:30513628
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G018000 0.5kb upstream 0.5kb upstream 2044 true Chr19: 1852748-1854791 Glycine max
Glyma.19G018000 0.5kb upstream 0.5kb upstream 500 false Chr19: 1854292-1854791 Glycine max
Glyma.19G018000 0.5kb downstream 0.5kb downstream 2044 true Chr19: 1852248-1854291 Glycine max
Glyma.19G018000 0.5kb downstream 0.5kb downstream 500 false Chr19: 1852248-1852747 Glycine max
Glyma.19G018000 1.0kb upstream 1.0kb upstream 2544 true Chr19: 1852748-1855291 Glycine max
Glyma.19G018000 1.0kb upstream 1.0kb upstream 1000 false Chr19: 1854292-1855291 Glycine max
Glyma.19G018000 1.0kb downstream 1.0kb downstream 2544 true Chr19: 1851748-1854291 Glycine max
Glyma.19G018000 1.0kb downstream 1.0kb downstream 1000 false Chr19: 1851748-1852747 Glycine max
Glyma.19G018000 2.0kb upstream 2.0kb upstream 3544 true Chr19: 1852748-1856291 Glycine max
Glyma.19G018000 2.0kb upstream 2.0kb upstream 2000 false Chr19: 1854292-1856291 Glycine max
Glyma.19G018000 2.0kb downstream 2.0kb downstream 3544 true Chr19: 1850748-1854291 Glycine max
Glyma.19G018000 2.0kb downstream 2.0kb downstream 2000 false Chr19: 1850748-1852747 Glycine max
Glyma.19G018000 5.0kb upstream 5.0kb upstream 6544 true Chr19: 1852748-1859291 Glycine max
Glyma.19G018000 5.0kb upstream 5.0kb upstream 5000 false Chr19: 1854292-1859291 Glycine max
Glyma.19G018000 5.0kb downstream 5.0kb downstream 6544 true Chr19: 1847748-1854291 Glycine max
Glyma.19G018000 5.0kb downstream 5.0kb downstream 5000 false Chr19: 1847748-1852747 Glycine max
Glyma.19G018000 10.0kb upstream 10.0kb upstream 11544 true Chr19: 1852748-1864291 Glycine max
Glyma.19G018000 10.0kb upstream 10.0kb upstream 10000 false Chr19: 1854292-1864291 Glycine max
Glyma.19G018000 10.0kb downstream 10.0kb downstream 11544 true Chr19: 1842748-1854291 Glycine max
Glyma.19G018000 10.0kb downstream 10.0kb downstream 10000 false Chr19: 1842748-1852747 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122247681 5265 Fabidae Singleton cluster - no MSA
123991402 5270 Rosid Singleton cluster - no MSA
123743490 5271 Pentapetalae View MSA
122793573 5272 Eudicot View MSA
122043730 5273 Angiosperm View MSA
121347551 5274 Embryophyte View MSA
123427150 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.64508 0.0 8.93116   High
cufflinks 2.39951 0.0 8.19494    
cufflinks 1.41219 0.0 5.03251   Low
cufflinks 2.18783 0.0 7.52987    
cufflinks 1.49863 0.0 5.33391    
cufflinks 1.48813 0.0 5.2978    
cufflinks 2.62333 0.0 8.87745   High
cufflinks 1.72552 0.0 6.06788    
cufflinks 1.63147 0.0 5.76637    
cufflinks 1.969        
cufflinks 1.48       Low
cufflinks 2.684        
cufflinks 2.721       High
cufflinks 2.996       High
cufflinks 1.552       Low
cufflinks 2.142        
cufflinks 1.344       Low
cufflinks 3.276       High
cufflinks 2.91       High
cufflinks 1.593        
cufflinks 1.719        
cufflinks 2.1        
cufflinks 2.141        
cufflinks 2.055        
cufflinks 1.826        
cufflinks 1.581        

0 Strain