Gene : Glyma.02G144600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23083//PTHR23083:SF430 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR Genomic Order:  1446
Name:  ? Glyma.02G144600 Secondary Identifier:  ? PAC:30506437
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G144600 0.5kb upstream 0.5kb upstream 5649 true Chr02: 14923607-14929255 Glycine max
Glyma.02G144600 0.5kb upstream 0.5kb upstream 500 false Chr02: 14928756-14929255 Glycine max
Glyma.02G144600 0.5kb downstream 0.5kb downstream 5649 true Chr02: 14923107-14928755 Glycine max
Glyma.02G144600 0.5kb downstream 0.5kb downstream 500 false Chr02: 14923107-14923606 Glycine max
Glyma.02G144600 1.0kb upstream 1.0kb upstream 6149 true Chr02: 14923607-14929755 Glycine max
Glyma.02G144600 1.0kb upstream 1.0kb upstream 1000 false Chr02: 14928756-14929755 Glycine max
Glyma.02G144600 1.0kb downstream 1.0kb downstream 6149 true Chr02: 14922607-14928755 Glycine max
Glyma.02G144600 1.0kb downstream 1.0kb downstream 1000 false Chr02: 14922607-14923606 Glycine max
Glyma.02G144600 2.0kb upstream 2.0kb upstream 7149 true Chr02: 14923607-14930755 Glycine max
Glyma.02G144600 2.0kb upstream 2.0kb upstream 2000 false Chr02: 14928756-14930755 Glycine max
Glyma.02G144600 2.0kb downstream 2.0kb downstream 7149 true Chr02: 14921607-14928755 Glycine max
Glyma.02G144600 2.0kb downstream 2.0kb downstream 2000 false Chr02: 14921607-14923606 Glycine max
Glyma.02G144600 5.0kb upstream 5.0kb upstream 10149 true Chr02: 14923607-14933755 Glycine max
Glyma.02G144600 5.0kb upstream 5.0kb upstream 5000 false Chr02: 14928756-14933755 Glycine max
Glyma.02G144600 5.0kb downstream 5.0kb downstream 10149 true Chr02: 14918607-14928755 Glycine max
Glyma.02G144600 5.0kb downstream 5.0kb downstream 5000 false Chr02: 14918607-14923606 Glycine max
Glyma.02G144600 10.0kb upstream 10.0kb upstream 15149 true Chr02: 14923607-14938755 Glycine max
Glyma.02G144600 10.0kb upstream 10.0kb upstream 10000 false Chr02: 14928756-14938755 Glycine max
Glyma.02G144600 10.0kb downstream 10.0kb downstream 15149 true Chr02: 14913607-14928755 Glycine max
Glyma.02G144600 10.0kb downstream 10.0kb downstream 10000 false Chr02: 14913607-14923606 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311802 5265 Fabidae View MSA
124067211 5270 Rosid View MSA
123736449 5271 Pentapetalae View MSA
122791589 5272 Eudicot View MSA
122042735 5273 Angiosperm View MSA
121349439 5274 Embryophyte View MSA
123381312 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.663 0.0 14.4536    
cufflinks 7.91309 0.0 27.0284    
cufflinks 2.83365 0.0 9.52365   Low
cufflinks 9.1806 0.0 31.3417   High
cufflinks 7.81228 0.0 26.6962    
cufflinks 4.15545 0.0 15.121    
cufflinks 5.78765 0.0 17.5489    
cufflinks 6.6423 0.0 22.8609    
cufflinks 5.14171 0.0 15.7303    
cufflinks 3.303        
cufflinks 0.327       Low
cufflinks 2.005        
cufflinks 3.803       High
cufflinks 3.888       High
cufflinks 0.188       Low
cufflinks 1.513        
cufflinks 1.093        
cufflinks 3.274        
cufflinks 3.799       High
cufflinks 1.373        
cufflinks 0.497       Low
cufflinks 1.934        
cufflinks 2.208        
cufflinks 0.642        
cufflinks 1.444        
cufflinks 0.753        

0 Strain