Gene : Glyma.03G016800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR14145:SF2 - COP9 SIGNALOSOME COMPLEX SUBUNIT 1 Genomic Order:  168
Name:  ? Glyma.03G016800 Secondary Identifier:  ? PAC:30518509
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G016800 0.5kb upstream 0.5kb upstream 6254 true Chr03: 1690819-1697072 Glycine max
Glyma.03G016800 0.5kb upstream 0.5kb upstream 500 false Chr03: 1696573-1697072 Glycine max
Glyma.03G016800 0.5kb downstream 0.5kb downstream 6254 true Chr03: 1690319-1696572 Glycine max
Glyma.03G016800 0.5kb downstream 0.5kb downstream 500 false Chr03: 1690319-1690818 Glycine max
Glyma.03G016800 1.0kb upstream 1.0kb upstream 6754 true Chr03: 1690819-1697572 Glycine max
Glyma.03G016800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 1696573-1697572 Glycine max
Glyma.03G016800 1.0kb downstream 1.0kb downstream 6754 true Chr03: 1689819-1696572 Glycine max
Glyma.03G016800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 1689819-1690818 Glycine max
Glyma.03G016800 2.0kb upstream 2.0kb upstream 7754 true Chr03: 1690819-1698572 Glycine max
Glyma.03G016800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 1696573-1698572 Glycine max
Glyma.03G016800 2.0kb downstream 2.0kb downstream 7754 true Chr03: 1688819-1696572 Glycine max
Glyma.03G016800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 1688819-1690818 Glycine max
Glyma.03G016800 5.0kb upstream 5.0kb upstream 10754 true Chr03: 1690819-1701572 Glycine max
Glyma.03G016800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 1696573-1701572 Glycine max
Glyma.03G016800 5.0kb downstream 5.0kb downstream 10754 true Chr03: 1685819-1696572 Glycine max
Glyma.03G016800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 1685819-1690818 Glycine max
Glyma.03G016800 10.0kb upstream 10.0kb upstream 15754 true Chr03: 1690819-1706572 Glycine max
Glyma.03G016800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 1696573-1706572 Glycine max
Glyma.03G016800 10.0kb downstream 10.0kb downstream 15754 true Chr03: 1680819-1696572 Glycine max
Glyma.03G016800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 1680819-1690818 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303259 5265 Fabidae View MSA
124062748 5270 Rosid View MSA
123740454 5271 Pentapetalae View MSA
122790295 5272 Eudicot View MSA
122047675 5273 Angiosperm View MSA
121344985 5274 Embryophyte View MSA
123424538 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.89294 0.0 34.7126   Low
cufflinks 12.2788 0.0 42.1493    
cufflinks 12.5762 0.0 43.0951    
cufflinks 15.0739 0.0 51.1453   High
cufflinks 12.4235 0.0 42.5119    
cufflinks 10.9757 0.0 37.9935   Low
cufflinks 12.6991 0.0 43.5354    
cufflinks 14.4785 0.0 49.1896    
cufflinks 15.0274 0.0 50.9779   High
cufflinks 1.767        
cufflinks 1.291       Low
cufflinks 1.776        
cufflinks 2.088       High
cufflinks 2.091       High
cufflinks 1.436        
cufflinks 1.544        
cufflinks 1.223       Low
cufflinks 1.752        
cufflinks 2.121       High
cufflinks 1.246       Low
cufflinks 1.519        
cufflinks 1.338        
cufflinks 1.506        
cufflinks 1.666        
cufflinks 1.157       Low
cufflinks 1.926        

0 Strain