Gene : Glyma.03G046200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11954:SF25 - LS1-LIKE PROTEIN Genomic Order:  462
Name:  ? Glyma.03G046200 Secondary Identifier:  ? PAC:30516935
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6498 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G046200 0.5kb upstream 0.5kb upstream 4096 true Chr03: 5895172-5899267 Glycine max
Glyma.03G046200 0.5kb upstream 0.5kb upstream 500 false Chr03: 5895172-5895671 Glycine max
Glyma.03G046200 0.5kb downstream 0.5kb downstream 4096 true Chr03: 5895672-5899767 Glycine max
Glyma.03G046200 0.5kb downstream 0.5kb downstream 500 false Chr03: 5899268-5899767 Glycine max
Glyma.03G046200 1.0kb upstream 1.0kb upstream 4596 true Chr03: 5894672-5899267 Glycine max
Glyma.03G046200 1.0kb upstream 1.0kb upstream 1000 false Chr03: 5894672-5895671 Glycine max
Glyma.03G046200 1.0kb downstream 1.0kb downstream 4596 true Chr03: 5895672-5900267 Glycine max
Glyma.03G046200 1.0kb downstream 1.0kb downstream 1000 false Chr03: 5899268-5900267 Glycine max
Glyma.03G046200 2.0kb upstream 2.0kb upstream 5596 true Chr03: 5893672-5899267 Glycine max
Glyma.03G046200 2.0kb upstream 2.0kb upstream 2000 false Chr03: 5893672-5895671 Glycine max
Glyma.03G046200 2.0kb downstream 2.0kb downstream 5596 true Chr03: 5895672-5901267 Glycine max
Glyma.03G046200 2.0kb downstream 2.0kb downstream 2000 false Chr03: 5899268-5901267 Glycine max
Glyma.03G046200 5.0kb upstream 5.0kb upstream 8596 true Chr03: 5890672-5899267 Glycine max
Glyma.03G046200 5.0kb upstream 5.0kb upstream 5000 false Chr03: 5890672-5895671 Glycine max
Glyma.03G046200 5.0kb downstream 5.0kb downstream 8596 true Chr03: 5895672-5904267 Glycine max
Glyma.03G046200 5.0kb downstream 5.0kb downstream 5000 false Chr03: 5899268-5904267 Glycine max
Glyma.03G046200 10.0kb upstream 10.0kb upstream 13596 true Chr03: 5885672-5899267 Glycine max
Glyma.03G046200 10.0kb upstream 10.0kb upstream 10000 false Chr03: 5885672-5895671 Glycine max
Glyma.03G046200 10.0kb downstream 10.0kb downstream 13596 true Chr03: 5895672-5909267 Glycine max
Glyma.03G046200 10.0kb downstream 10.0kb downstream 10000 false Chr03: 5899268-5909267 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026284 5273 Angiosperm View MSA
122315018 5265 Fabidae View MSA
124069445 5270 Rosid View MSA
123741534 5271 Pentapetalae View MSA
122794012 5272 Eudicot View MSA
121349175 5274 Embryophyte View MSA
123424544 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 44.3621 0.0 119.333 High High
cufflinks 5.7295 0.0 19.4297    
cufflinks 4.83275 0.0 16.6159   Low
cufflinks 15.2156 0.0 44.9979    
cufflinks 8.72109 0.0 28.0406    
cufflinks 56.8193 0.0 151.773 High High
cufflinks 6.01834 0.0 20.3182    
cufflinks 12.1707 0.0 37.1532    
cufflinks 8.26874 0.0 26.7025    
cufflinks 2.25        
cufflinks 4.747        
cufflinks 0.883       Low
cufflinks 3.37        
cufflinks 2.738        
cufflinks 0.837       Low
cufflinks 2.301        
cufflinks 2.143        
cufflinks 1.524        
cufflinks 1.272        
cufflinks 2.869        
cufflinks 7.824     High High
cufflinks 2.537        
cufflinks 1.14       Low
cufflinks 9.83     High High
cufflinks 3.546        
cufflinks 3.764        

0 Strain