Gene : Glyma.02G280000 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR31604:SF2 - PROTEIN SHI RELATED SEQUENCE 6 Genomic Order:  2800
Name:  ? Glyma.02G280000 Secondary Identifier:  ? PAC:30507795
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G280000 0.5kb upstream 0.5kb upstream 3496 true Chr02: 46225819-46229314 Glycine max
Glyma.02G280000 0.5kb upstream 0.5kb upstream 500 false Chr02: 46228815-46229314 Glycine max
Glyma.02G280000 0.5kb downstream 0.5kb downstream 3496 true Chr02: 46225319-46228814 Glycine max
Glyma.02G280000 0.5kb downstream 0.5kb downstream 500 false Chr02: 46225319-46225818 Glycine max
Glyma.02G280000 1.0kb upstream 1.0kb upstream 3996 true Chr02: 46225819-46229814 Glycine max
Glyma.02G280000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 46228815-46229814 Glycine max
Glyma.02G280000 1.0kb downstream 1.0kb downstream 3996 true Chr02: 46224819-46228814 Glycine max
Glyma.02G280000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 46224819-46225818 Glycine max
Glyma.02G280000 2.0kb upstream 2.0kb upstream 4996 true Chr02: 46225819-46230814 Glycine max
Glyma.02G280000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 46228815-46230814 Glycine max
Glyma.02G280000 2.0kb downstream 2.0kb downstream 4996 true Chr02: 46223819-46228814 Glycine max
Glyma.02G280000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 46223819-46225818 Glycine max
Glyma.02G280000 5.0kb upstream 5.0kb upstream 7996 true Chr02: 46225819-46233814 Glycine max
Glyma.02G280000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 46228815-46233814 Glycine max
Glyma.02G280000 5.0kb downstream 5.0kb downstream 7996 true Chr02: 46220819-46228814 Glycine max
Glyma.02G280000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 46220819-46225818 Glycine max
Glyma.02G280000 10.0kb upstream 10.0kb upstream 12996 true Chr02: 46225819-46238814 Glycine max
Glyma.02G280000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 46228815-46238814 Glycine max
Glyma.02G280000 10.0kb downstream 10.0kb downstream 12996 true Chr02: 46215819-46228814 Glycine max
Glyma.02G280000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 46215819-46225818 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310499 5265 Fabidae View MSA
124069167 5270 Rosid View MSA
123749314 5271 Pentapetalae View MSA
122796752 5272 Eudicot View MSA
122049669 5273 Angiosperm View MSA
121344202 5274 Embryophyte View MSA
123379999 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.94385 0.0 8.64633    
cufflinks 4.72361 0.0 13.1689    
cufflinks 4.71817 0.0 13.1535    
cufflinks 3.42569 0.0 9.86213    
cufflinks 4.08073 0.0 11.5037    
cufflinks 0.705307 0.0 2.47969   Low
cufflinks 2.10946 0.0 6.47607    
cufflinks 10.4478 0.0 27.8951   High
cufflinks 5.37327 0.0 14.7937    
cufflinks 3.008        
cufflinks 1.255       Low
cufflinks 5.314       High
cufflinks 3.543        
cufflinks 3.084        
cufflinks 0.536       Low
cufflinks 1.818        
cufflinks 4.092        
cufflinks 6.061       High
cufflinks 6.058       High
cufflinks 1.24       Low
cufflinks 2.481        
cufflinks 1.772        
cufflinks 1.951        
cufflinks 1.852        
cufflinks 1.355        
cufflinks 4.173        

0 Strain