Gene : Glyma.19G052100 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  521
Name:  ? Glyma.19G052100 Secondary Identifier:  ? PAC:30512213
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G052100 0.5kb upstream 0.5kb upstream 10525 true Chr19: 8481060-8491584 Glycine max
Glyma.19G052100 0.5kb upstream 0.5kb upstream 500 false Chr19: 8481060-8481559 Glycine max
Glyma.19G052100 0.5kb downstream 0.5kb downstream 10525 true Chr19: 8481560-8492084 Glycine max
Glyma.19G052100 0.5kb downstream 0.5kb downstream 500 false Chr19: 8491585-8492084 Glycine max
Glyma.19G052100 1.0kb upstream 1.0kb upstream 11025 true Chr19: 8480560-8491584 Glycine max
Glyma.19G052100 1.0kb upstream 1.0kb upstream 1000 false Chr19: 8480560-8481559 Glycine max
Glyma.19G052100 1.0kb downstream 1.0kb downstream 11025 true Chr19: 8481560-8492584 Glycine max
Glyma.19G052100 1.0kb downstream 1.0kb downstream 1000 false Chr19: 8491585-8492584 Glycine max
Glyma.19G052100 2.0kb upstream 2.0kb upstream 12025 true Chr19: 8479560-8491584 Glycine max
Glyma.19G052100 2.0kb upstream 2.0kb upstream 2000 false Chr19: 8479560-8481559 Glycine max
Glyma.19G052100 2.0kb downstream 2.0kb downstream 12025 true Chr19: 8481560-8493584 Glycine max
Glyma.19G052100 2.0kb downstream 2.0kb downstream 2000 false Chr19: 8491585-8493584 Glycine max
Glyma.19G052100 5.0kb upstream 5.0kb upstream 15025 true Chr19: 8476560-8491584 Glycine max
Glyma.19G052100 5.0kb upstream 5.0kb upstream 5000 false Chr19: 8476560-8481559 Glycine max
Glyma.19G052100 5.0kb downstream 5.0kb downstream 15025 true Chr19: 8481560-8496584 Glycine max
Glyma.19G052100 5.0kb downstream 5.0kb downstream 5000 false Chr19: 8491585-8496584 Glycine max
Glyma.19G052100 10.0kb upstream 10.0kb upstream 20025 true Chr19: 8471560-8491584 Glycine max
Glyma.19G052100 10.0kb upstream 10.0kb upstream 10000 false Chr19: 8471560-8481559 Glycine max
Glyma.19G052100 10.0kb downstream 10.0kb downstream 20025 true Chr19: 8481560-8501584 Glycine max
Glyma.19G052100 10.0kb downstream 10.0kb downstream 10000 false Chr19: 8491585-8501584 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305765 5265 Fabidae View MSA
124067995 5270 Rosid View MSA
123737960 5271 Pentapetalae View MSA
122786713 5272 Eudicot View MSA
122046332 5273 Angiosperm View MSA
121347677 5274 Embryophyte View MSA
123426917 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.30259 0.0 20.1095    
cufflinks 11.1001 0.0 29.8294    
cufflinks 4.47487 0.0 12.9152   Low
cufflinks 9.26166 0.0 25.0802    
cufflinks 12.1544 0.0 32.5696    
cufflinks 7.36155 0.0 20.2562    
cufflinks 15.4453 0.0 41.2121   High
cufflinks 9.52736 0.0 25.7828    
cufflinks 11.5879 0.0 31.0955    
cufflinks 1.683        
cufflinks 0.257       Low
cufflinks 1.549        
cufflinks 3.313       High
cufflinks 4.314       High
cufflinks 0.639        
cufflinks 1.032        
cufflinks 0.825        
cufflinks 1.992        
cufflinks 2.19        
cufflinks 0.929        
cufflinks 0.423       Low
cufflinks 1.055        
cufflinks 1.628        
cufflinks 0.294       Low
cufflinks 1.029        
cufflinks 0.745        

0 Strain