Gene : Glyma.19G054200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11410 - ATP SYNTHASE SUBUNIT A Genomic Order:  542
Name:  ? Glyma.19G054200 Secondary Identifier:  ? PAC:30513269
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6126 Glycine max pathologic  
Gmax PWY-7219 Glycine max pathologic  
Gmax PWY-7229 Glycine max pathologic  
Gmax PWY-841 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G054200 0.5kb upstream 0.5kb upstream 2879 true Chr19: 8965354-8968232 Glycine max
Glyma.19G054200 0.5kb upstream 0.5kb upstream 500 false Chr19: 8967733-8968232 Glycine max
Glyma.19G054200 0.5kb downstream 0.5kb downstream 2879 true Chr19: 8964854-8967732 Glycine max
Glyma.19G054200 0.5kb downstream 0.5kb downstream 500 false Chr19: 8964854-8965353 Glycine max
Glyma.19G054200 1.0kb upstream 1.0kb upstream 3379 true Chr19: 8965354-8968732 Glycine max
Glyma.19G054200 1.0kb upstream 1.0kb upstream 1000 false Chr19: 8967733-8968732 Glycine max
Glyma.19G054200 1.0kb downstream 1.0kb downstream 3379 true Chr19: 8964354-8967732 Glycine max
Glyma.19G054200 1.0kb downstream 1.0kb downstream 1000 false Chr19: 8964354-8965353 Glycine max
Glyma.19G054200 2.0kb upstream 2.0kb upstream 4379 true Chr19: 8965354-8969732 Glycine max
Glyma.19G054200 2.0kb upstream 2.0kb upstream 2000 false Chr19: 8967733-8969732 Glycine max
Glyma.19G054200 2.0kb downstream 2.0kb downstream 4379 true Chr19: 8963354-8967732 Glycine max
Glyma.19G054200 2.0kb downstream 2.0kb downstream 2000 false Chr19: 8963354-8965353 Glycine max
Glyma.19G054200 5.0kb upstream 5.0kb upstream 7379 true Chr19: 8965354-8972732 Glycine max
Glyma.19G054200 5.0kb upstream 5.0kb upstream 5000 false Chr19: 8967733-8972732 Glycine max
Glyma.19G054200 5.0kb downstream 5.0kb downstream 7379 true Chr19: 8960354-8967732 Glycine max
Glyma.19G054200 5.0kb downstream 5.0kb downstream 5000 false Chr19: 8960354-8965353 Glycine max
Glyma.19G054200 10.0kb upstream 10.0kb upstream 12379 true Chr19: 8965354-8977732 Glycine max
Glyma.19G054200 10.0kb upstream 10.0kb upstream 10000 false Chr19: 8967733-8977732 Glycine max
Glyma.19G054200 10.0kb downstream 10.0kb downstream 12379 true Chr19: 8955354-8967732 Glycine max
Glyma.19G054200 10.0kb downstream 10.0kb downstream 10000 false Chr19: 8955354-8965353 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029129 5273 Angiosperm View MSA
122297941 5265 Fabidae View MSA
124040379 5270 Rosid View MSA
123743071 5271 Pentapetalae View MSA
122770511 5272 Eudicot View MSA
121348660 5274 Embryophyte View MSA
123428637 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.48052 0.0 20.4654   High
cufflinks 0.78923 0.0 3.1867    
cufflinks 0.591299 0.0 2.41502    
cufflinks 7.51711 0.0 27.5362   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.309525 0.0 1.32647    
cufflinks 6.95909 0.0 25.6469   High
cufflinks 0.31042 0.0 1.32369    
cufflinks 0.463923 0.0 1.92037    
cufflinks 0.218        
cufflinks 0.024     Low Low
cufflinks 0.187        
cufflinks 0.063     Low  
cufflinks 0.095        
cufflinks 0.049     Low  
cufflinks 0.421        
cufflinks 0.115        
cufflinks 0.18        
cufflinks 0.298        
cufflinks 0.553       High
cufflinks 0.025     Low Low
cufflinks 0.538       High
cufflinks 0.687       High
cufflinks 0.049     Low  
cufflinks 0.609       High
cufflinks 0.01     Low Low

0 Strain