Gene : Glyma.02G298900 G. max Wm82.a2.v1
Defline:  (1 of 24) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  2989
Name:  ? Glyma.02G298900 Secondary Identifier:  ? PAC:30509770
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G298900 0.5kb upstream 0.5kb upstream 4523 true Chr02: 47605962-47610484 Glycine max
Glyma.02G298900 0.5kb upstream 0.5kb upstream 500 false Chr02: 47609985-47610484 Glycine max
Glyma.02G298900 0.5kb downstream 0.5kb downstream 4523 true Chr02: 47605462-47609984 Glycine max
Glyma.02G298900 0.5kb downstream 0.5kb downstream 500 false Chr02: 47605462-47605961 Glycine max
Glyma.02G298900 1.0kb upstream 1.0kb upstream 5023 true Chr02: 47605962-47610984 Glycine max
Glyma.02G298900 1.0kb upstream 1.0kb upstream 1000 false Chr02: 47609985-47610984 Glycine max
Glyma.02G298900 1.0kb downstream 1.0kb downstream 5023 true Chr02: 47604962-47609984 Glycine max
Glyma.02G298900 1.0kb downstream 1.0kb downstream 1000 false Chr02: 47604962-47605961 Glycine max
Glyma.02G298900 2.0kb upstream 2.0kb upstream 6023 true Chr02: 47605962-47611984 Glycine max
Glyma.02G298900 2.0kb upstream 2.0kb upstream 2000 false Chr02: 47609985-47611984 Glycine max
Glyma.02G298900 2.0kb downstream 2.0kb downstream 6023 true Chr02: 47603962-47609984 Glycine max
Glyma.02G298900 2.0kb downstream 2.0kb downstream 2000 false Chr02: 47603962-47605961 Glycine max
Glyma.02G298900 5.0kb upstream 5.0kb upstream 9023 true Chr02: 47605962-47614984 Glycine max
Glyma.02G298900 5.0kb upstream 5.0kb upstream 5000 false Chr02: 47609985-47614984 Glycine max
Glyma.02G298900 5.0kb downstream 5.0kb downstream 9023 true Chr02: 47600962-47609984 Glycine max
Glyma.02G298900 5.0kb downstream 5.0kb downstream 5000 false Chr02: 47600962-47605961 Glycine max
Glyma.02G298900 10.0kb upstream 10.0kb upstream 14023 true Chr02: 47605962-47619984 Glycine max
Glyma.02G298900 10.0kb upstream 10.0kb upstream 10000 false Chr02: 47609985-47619984 Glycine max
Glyma.02G298900 10.0kb downstream 10.0kb downstream 14023 true Chr02: 47595962-47609984 Glycine max
Glyma.02G298900 10.0kb downstream 10.0kb downstream 10000 false Chr02: 47595962-47605961 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302112 5265 Fabidae View MSA
124068825 5270 Rosid View MSA
123736468 5271 Pentapetalae View MSA
122787025 5272 Eudicot View MSA
122042185 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.2375 0.0 4.27435   High
cufflinks 1.04143 0.0 3.69926    
cufflinks 0.603127 0.0 3.36031    
cufflinks 0.657022 0.0 2.67533    
cufflinks 0.891306 0.0 4.52887    
cufflinks 0.405579 0.0 1.82047   Low
cufflinks 0.726379 0.0 2.9234    
cufflinks 0.858541 0.0 3.26254    
cufflinks 0.800125 0.0 3.11499    
cufflinks 0.311        
cufflinks 0.188       Low
cufflinks 0.482        
cufflinks 0.634        
cufflinks 0.781       High
cufflinks 0.22       Low
cufflinks 0.514        
cufflinks 0.334        
cufflinks 0.577        
cufflinks 0.652       High
cufflinks 0.483        
cufflinks 0.236       Low
cufflinks 0.487        
cufflinks 0.639       High
cufflinks 0.287        
cufflinks 0.51        
cufflinks 0.221       Low

0 Strain