Gene : Glyma.02G301100 G. max Wm82.a2.v1
Defline:  (1 of 25) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  3011
Name:  ? Glyma.02G301100 Secondary Identifier:  ? PAC:30508099
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G301100 0.5kb upstream 0.5kb upstream 1954 true Chr02: 47711588-47713541 Glycine max
Glyma.02G301100 0.5kb upstream 0.5kb upstream 500 false Chr02: 47711588-47712087 Glycine max
Glyma.02G301100 0.5kb downstream 0.5kb downstream 1954 true Chr02: 47712088-47714041 Glycine max
Glyma.02G301100 0.5kb downstream 0.5kb downstream 500 false Chr02: 47713542-47714041 Glycine max
Glyma.02G301100 1.0kb upstream 1.0kb upstream 2454 true Chr02: 47711088-47713541 Glycine max
Glyma.02G301100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 47711088-47712087 Glycine max
Glyma.02G301100 1.0kb downstream 1.0kb downstream 2454 true Chr02: 47712088-47714541 Glycine max
Glyma.02G301100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 47713542-47714541 Glycine max
Glyma.02G301100 2.0kb upstream 2.0kb upstream 3454 true Chr02: 47710088-47713541 Glycine max
Glyma.02G301100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 47710088-47712087 Glycine max
Glyma.02G301100 2.0kb downstream 2.0kb downstream 3454 true Chr02: 47712088-47715541 Glycine max
Glyma.02G301100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 47713542-47715541 Glycine max
Glyma.02G301100 5.0kb upstream 5.0kb upstream 6454 true Chr02: 47707088-47713541 Glycine max
Glyma.02G301100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 47707088-47712087 Glycine max
Glyma.02G301100 5.0kb downstream 5.0kb downstream 6454 true Chr02: 47712088-47718541 Glycine max
Glyma.02G301100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 47713542-47718541 Glycine max
Glyma.02G301100 10.0kb upstream 10.0kb upstream 11454 true Chr02: 47702088-47713541 Glycine max
Glyma.02G301100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 47702088-47712087 Glycine max
Glyma.02G301100 10.0kb downstream 10.0kb downstream 11454 true Chr02: 47712088-47723541 Glycine max
Glyma.02G301100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 47713542-47723541 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312019 5265 Fabidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.1387 0.0 4.29164    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.987784 0.0 3.74621    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0749102 0.0 0.322631 Low  
cufflinks 0.0812205 0.0 0.34634 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.107        
cufflinks 0.118        
cufflinks 0.143        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.024     Low  
cufflinks 0.049     Low  
cufflinks 0.772       High
cufflinks 0.05     Low  
cufflinks 0.012     Low Low
cufflinks 0.029     Low  
cufflinks 0.026     Low  
cufflinks 0.073     Low  
cufflinks 0.096        
cufflinks 0.026     Low  
cufflinks 0.059     Low  

0 Strain