Gene : Glyma.19G044900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  449
Name:  ? Glyma.19G044900 Secondary Identifier:  ? PAC:30514709
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-735 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G044900 0.5kb upstream 0.5kb upstream 3080 true Chr19: 6681356-6684435 Glycine max
Glyma.19G044900 0.5kb upstream 0.5kb upstream 500 false Chr19: 6681356-6681855 Glycine max
Glyma.19G044900 0.5kb downstream 0.5kb downstream 3080 true Chr19: 6681856-6684935 Glycine max
Glyma.19G044900 0.5kb downstream 0.5kb downstream 500 false Chr19: 6684436-6684935 Glycine max
Glyma.19G044900 1.0kb upstream 1.0kb upstream 3580 true Chr19: 6680856-6684435 Glycine max
Glyma.19G044900 1.0kb upstream 1.0kb upstream 1000 false Chr19: 6680856-6681855 Glycine max
Glyma.19G044900 1.0kb downstream 1.0kb downstream 3580 true Chr19: 6681856-6685435 Glycine max
Glyma.19G044900 1.0kb downstream 1.0kb downstream 1000 false Chr19: 6684436-6685435 Glycine max
Glyma.19G044900 2.0kb upstream 2.0kb upstream 4580 true Chr19: 6679856-6684435 Glycine max
Glyma.19G044900 2.0kb upstream 2.0kb upstream 2000 false Chr19: 6679856-6681855 Glycine max
Glyma.19G044900 2.0kb downstream 2.0kb downstream 4580 true Chr19: 6681856-6686435 Glycine max
Glyma.19G044900 2.0kb downstream 2.0kb downstream 2000 false Chr19: 6684436-6686435 Glycine max
Glyma.19G044900 5.0kb upstream 5.0kb upstream 7580 true Chr19: 6676856-6684435 Glycine max
Glyma.19G044900 5.0kb upstream 5.0kb upstream 5000 false Chr19: 6676856-6681855 Glycine max
Glyma.19G044900 5.0kb downstream 5.0kb downstream 7580 true Chr19: 6681856-6689435 Glycine max
Glyma.19G044900 5.0kb downstream 5.0kb downstream 5000 false Chr19: 6684436-6689435 Glycine max
Glyma.19G044900 10.0kb upstream 10.0kb upstream 12580 true Chr19: 6671856-6684435 Glycine max
Glyma.19G044900 10.0kb upstream 10.0kb upstream 10000 false Chr19: 6671856-6681855 Glycine max
Glyma.19G044900 10.0kb downstream 10.0kb downstream 12580 true Chr19: 6681856-6694435 Glycine max
Glyma.19G044900 10.0kb downstream 10.0kb downstream 10000 false Chr19: 6684436-6694435 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298183 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.29796 0.0 23.2142   Low
cufflinks 34.1447 0.0 92.1766 High  
cufflinks 7.83972 0.0 21.9411   Low
cufflinks 39.7167 0.0 108.138 High  
cufflinks 71.4249 0.0 205.346 High High
cufflinks 36.637 0.0 99.1853 High  
cufflinks 8.40435 0.0 23.5045   Low
cufflinks 17.7748 0.0 47.484    
cufflinks 43.004 0.0 117.79 High  
cufflinks 187.098     High High
cufflinks 11.311     High  
cufflinks 34.769     High  
cufflinks 77.773     High  
cufflinks 54.685     High  
cufflinks 13.133     High  
cufflinks 6.265       Low
cufflinks 391.675     High High
cufflinks 76.899     High  
cufflinks 37.126     High  
cufflinks 4.721       Low
cufflinks 12.733     High  
cufflinks 4.132       Low
cufflinks 95.368     High  
cufflinks 10.529     High  
cufflinks 3.948       Low
cufflinks 75.362     High  

0 Strain