Gene : Glyma.19G046600 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR31262:SF4 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Genomic Order:  466
Name:  ? Glyma.19G046600 Secondary Identifier:  ? PAC:30511256
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CALVIN-PWY Glycine max pathologic  
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-5723 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G046600 0.5kb upstream 0.5kb upstream 1978 true Chr19: 7188531-7190508 Glycine max
Glyma.19G046600 0.5kb upstream 0.5kb upstream 500 false Chr19: 7188531-7189030 Glycine max
Glyma.19G046600 0.5kb downstream 0.5kb downstream 1978 true Chr19: 7189031-7191008 Glycine max
Glyma.19G046600 0.5kb downstream 0.5kb downstream 500 false Chr19: 7190509-7191008 Glycine max
Glyma.19G046600 1.0kb upstream 1.0kb upstream 2478 true Chr19: 7188031-7190508 Glycine max
Glyma.19G046600 1.0kb upstream 1.0kb upstream 1000 false Chr19: 7188031-7189030 Glycine max
Glyma.19G046600 1.0kb downstream 1.0kb downstream 2478 true Chr19: 7189031-7191508 Glycine max
Glyma.19G046600 1.0kb downstream 1.0kb downstream 1000 false Chr19: 7190509-7191508 Glycine max
Glyma.19G046600 2.0kb upstream 2.0kb upstream 3478 true Chr19: 7187031-7190508 Glycine max
Glyma.19G046600 2.0kb upstream 2.0kb upstream 2000 false Chr19: 7187031-7189030 Glycine max
Glyma.19G046600 2.0kb downstream 2.0kb downstream 3478 true Chr19: 7189031-7192508 Glycine max
Glyma.19G046600 2.0kb downstream 2.0kb downstream 2000 false Chr19: 7190509-7192508 Glycine max
Glyma.19G046600 5.0kb upstream 5.0kb upstream 6478 true Chr19: 7184031-7190508 Glycine max
Glyma.19G046600 5.0kb upstream 5.0kb upstream 5000 false Chr19: 7184031-7189030 Glycine max
Glyma.19G046600 5.0kb downstream 5.0kb downstream 6478 true Chr19: 7189031-7195508 Glycine max
Glyma.19G046600 5.0kb downstream 5.0kb downstream 5000 false Chr19: 7190509-7195508 Glycine max
Glyma.19G046600 10.0kb upstream 10.0kb upstream 11478 true Chr19: 7179031-7190508 Glycine max
Glyma.19G046600 10.0kb upstream 10.0kb upstream 10000 false Chr19: 7179031-7189030 Glycine max
Glyma.19G046600 10.0kb downstream 10.0kb downstream 11478 true Chr19: 7189031-7200508 Glycine max
Glyma.19G046600 10.0kb downstream 10.0kb downstream 10000 false Chr19: 7190509-7200508 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314391 5265 Fabidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2057.76 0.0 64554.4 High High
cufflinks 983.03 0.0 14447.8 High  
cufflinks 163.5 0.0 756.448 High  
cufflinks 838.062 0.0 10720.3 High  
cufflinks 39.8843 0.0 152.828 High Low
cufflinks 47.398 0.0 183.143 High  
cufflinks 367.898 0.0 2569.22 High  
cufflinks 280.229 0.0 1679.03 High  
cufflinks 22.6056 0.0 88.6044 High Low
cufflinks 59.36     High  
cufflinks 0.11       Low
cufflinks 33.577     High  
cufflinks 0.03     Low Low
cufflinks 0.144       Low
cufflinks 0.366        
cufflinks 779.621     High High
cufflinks 0.208        
cufflinks 55.383     High  
cufflinks 95.669     High  
cufflinks 769.874     High High
cufflinks 0.192        
cufflinks 658.247     High High
cufflinks 599.972     High High
cufflinks 0.143       Low
cufflinks 812.944     High High
cufflinks 0.45        

0 Strain