Gene : Glyma.19G046800 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR31262:SF4 - RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A, CHLOROPLASTIC-RELATED Genomic Order:  468
Name:  ? Glyma.19G046800 Secondary Identifier:  ? PAC:30515243
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CALVIN-PWY Glycine max pathologic  
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-5723 Glycine max pathologic  

Genomics

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G046800 0.5kb upstream 0.5kb upstream 1867 true Chr19: 7253110-7254976 Glycine max
Glyma.19G046800 0.5kb upstream 0.5kb upstream 500 false Chr19: 7253110-7253609 Glycine max
Glyma.19G046800 0.5kb downstream 0.5kb downstream 1867 true Chr19: 7253610-7255476 Glycine max
Glyma.19G046800 0.5kb downstream 0.5kb downstream 500 false Chr19: 7254977-7255476 Glycine max
Glyma.19G046800 1.0kb upstream 1.0kb upstream 2367 true Chr19: 7252610-7254976 Glycine max
Glyma.19G046800 1.0kb upstream 1.0kb upstream 1000 false Chr19: 7252610-7253609 Glycine max
Glyma.19G046800 1.0kb downstream 1.0kb downstream 2367 true Chr19: 7253610-7255976 Glycine max
Glyma.19G046800 1.0kb downstream 1.0kb downstream 1000 false Chr19: 7254977-7255976 Glycine max
Glyma.19G046800 2.0kb upstream 2.0kb upstream 3367 true Chr19: 7251610-7254976 Glycine max
Glyma.19G046800 2.0kb upstream 2.0kb upstream 2000 false Chr19: 7251610-7253609 Glycine max
Glyma.19G046800 2.0kb downstream 2.0kb downstream 3367 true Chr19: 7253610-7256976 Glycine max
Glyma.19G046800 2.0kb downstream 2.0kb downstream 2000 false Chr19: 7254977-7256976 Glycine max
Glyma.19G046800 5.0kb upstream 5.0kb upstream 6367 true Chr19: 7248610-7254976 Glycine max
Glyma.19G046800 5.0kb upstream 5.0kb upstream 5000 false Chr19: 7248610-7253609 Glycine max
Glyma.19G046800 5.0kb downstream 5.0kb downstream 6367 true Chr19: 7253610-7259976 Glycine max
Glyma.19G046800 5.0kb downstream 5.0kb downstream 5000 false Chr19: 7254977-7259976 Glycine max
Glyma.19G046800 10.0kb upstream 10.0kb upstream 11367 true Chr19: 7243610-7254976 Glycine max
Glyma.19G046800 10.0kb upstream 10.0kb upstream 10000 false Chr19: 7243610-7253609 Glycine max
Glyma.19G046800 10.0kb downstream 10.0kb downstream 11367 true Chr19: 7253610-7264976 Glycine max
Glyma.19G046800 10.0kb downstream 10.0kb downstream 10000 false Chr19: 7254977-7264976 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314391 5265 Fabidae View MSA
124066802 5270 Rosid View MSA
123747186 5271 Pentapetalae View MSA
122796864 5272 Eudicot View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2779.83 0.0 21020.8 High High
cufflinks 1310.82 0.0 6923.76 High  
cufflinks 220.159 0.0 686.185 High  
cufflinks 1061.08 0.0 5168.2 High  
cufflinks 52.7685 0.0 141.493 High Low
cufflinks 66.6257 0.0 180.416 High  
cufflinks 483.648 0.0 1819.92 High  
cufflinks 364.757 0.0 1274.29 High  
cufflinks 29.9112 0.0 80.1004 High Low
cufflinks 233.835     High  
cufflinks 0.222       Low
cufflinks 116.559     High  
cufflinks 0.534        
cufflinks 0.183       Low
cufflinks 0.64        
cufflinks 2540.509     High High
cufflinks 0.633        
cufflinks 202.484     High  
cufflinks 326.0     High  
cufflinks 2603.918     High High
cufflinks 0.73        
cufflinks 2219.164     High High
cufflinks 2049.498     High High
cufflinks 0.238       Low
cufflinks 2743.979     High High
cufflinks 1.052        

0 Strain