Gene : Glyma.02G230200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR31165:SF6 - PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Genomic Order:  2302
Name:  ? Glyma.02G230200 Secondary Identifier:  ? PAC:30506568
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G230200 0.5kb upstream 0.5kb upstream 4623 true Chr02: 41770803-41775425 Glycine max
Glyma.02G230200 0.5kb upstream 0.5kb upstream 500 false Chr02: 41770803-41771302 Glycine max
Glyma.02G230200 0.5kb downstream 0.5kb downstream 4623 true Chr02: 41771303-41775925 Glycine max
Glyma.02G230200 0.5kb downstream 0.5kb downstream 500 false Chr02: 41775426-41775925 Glycine max
Glyma.02G230200 1.0kb upstream 1.0kb upstream 5123 true Chr02: 41770303-41775425 Glycine max
Glyma.02G230200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 41770303-41771302 Glycine max
Glyma.02G230200 1.0kb downstream 1.0kb downstream 5123 true Chr02: 41771303-41776425 Glycine max
Glyma.02G230200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 41775426-41776425 Glycine max
Glyma.02G230200 2.0kb upstream 2.0kb upstream 6123 true Chr02: 41769303-41775425 Glycine max
Glyma.02G230200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 41769303-41771302 Glycine max
Glyma.02G230200 2.0kb downstream 2.0kb downstream 6123 true Chr02: 41771303-41777425 Glycine max
Glyma.02G230200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 41775426-41777425 Glycine max
Glyma.02G230200 5.0kb upstream 5.0kb upstream 9123 true Chr02: 41766303-41775425 Glycine max
Glyma.02G230200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 41766303-41771302 Glycine max
Glyma.02G230200 5.0kb downstream 5.0kb downstream 9123 true Chr02: 41771303-41780425 Glycine max
Glyma.02G230200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 41775426-41780425 Glycine max
Glyma.02G230200 10.0kb upstream 10.0kb upstream 14123 true Chr02: 41761303-41775425 Glycine max
Glyma.02G230200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 41761303-41771302 Glycine max
Glyma.02G230200 10.0kb downstream 10.0kb downstream 14123 true Chr02: 41771303-41785425 Glycine max
Glyma.02G230200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 41775426-41785425 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310216 5265 Fabidae View MSA
124067272 5270 Rosid View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.53158 0.0 10.6286    
cufflinks 1.31081 0.0 5.20692   Low
cufflinks 2.20472 0.0 11.931    
cufflinks 3.00634 0.0 14.4672    
cufflinks 10.281 0.0 40.0787   High
cufflinks 4.05627 0.0 19.6477    
cufflinks 3.6749 0.0 16.4773    
cufflinks 5.91684 0.0 23.0185    
cufflinks 16.573 0.0 68.9155   High
cufflinks 0.125        
cufflinks 0.042     Low Low
cufflinks 0.102     Low  
cufflinks 0.047     Low  
cufflinks 0.046     Low  
cufflinks 0.895       High
cufflinks 0.128        
cufflinks 0.028     Low Low
cufflinks 0.161        
cufflinks 0.137        
cufflinks 0.123        
cufflinks 0.121        
cufflinks 0.137        
cufflinks 0.14        
cufflinks 0.089        
cufflinks 0.089     Low  
cufflinks 0.045     Low Low

0 Strain