Gene : Glyma.02G239100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31852:SF1 - LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN-RELATED Genomic Order:  2391
Name:  ? Glyma.02G239100 Secondary Identifier:  ? PAC:30508048
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G239100 0.5kb upstream 0.5kb upstream 1602 true Chr02: 42754298-42755899 Glycine max
Glyma.02G239100 0.5kb upstream 0.5kb upstream 500 false Chr02: 42754298-42754797 Glycine max
Glyma.02G239100 0.5kb downstream 0.5kb downstream 1602 true Chr02: 42754798-42756399 Glycine max
Glyma.02G239100 0.5kb downstream 0.5kb downstream 500 false Chr02: 42755900-42756399 Glycine max
Glyma.02G239100 1.0kb upstream 1.0kb upstream 2102 true Chr02: 42753798-42755899 Glycine max
Glyma.02G239100 1.0kb upstream 1.0kb upstream 1000 false Chr02: 42753798-42754797 Glycine max
Glyma.02G239100 1.0kb downstream 1.0kb downstream 2102 true Chr02: 42754798-42756899 Glycine max
Glyma.02G239100 1.0kb downstream 1.0kb downstream 1000 false Chr02: 42755900-42756899 Glycine max
Glyma.02G239100 2.0kb upstream 2.0kb upstream 3102 true Chr02: 42752798-42755899 Glycine max
Glyma.02G239100 2.0kb upstream 2.0kb upstream 2000 false Chr02: 42752798-42754797 Glycine max
Glyma.02G239100 2.0kb downstream 2.0kb downstream 3102 true Chr02: 42754798-42757899 Glycine max
Glyma.02G239100 2.0kb downstream 2.0kb downstream 2000 false Chr02: 42755900-42757899 Glycine max
Glyma.02G239100 5.0kb upstream 5.0kb upstream 6102 true Chr02: 42749798-42755899 Glycine max
Glyma.02G239100 5.0kb upstream 5.0kb upstream 5000 false Chr02: 42749798-42754797 Glycine max
Glyma.02G239100 5.0kb downstream 5.0kb downstream 6102 true Chr02: 42754798-42760899 Glycine max
Glyma.02G239100 5.0kb downstream 5.0kb downstream 5000 false Chr02: 42755900-42760899 Glycine max
Glyma.02G239100 10.0kb upstream 10.0kb upstream 11102 true Chr02: 42744798-42755899 Glycine max
Glyma.02G239100 10.0kb upstream 10.0kb upstream 10000 false Chr02: 42744798-42754797 Glycine max
Glyma.02G239100 10.0kb downstream 10.0kb downstream 11102 true Chr02: 42754798-42765899 Glycine max
Glyma.02G239100 10.0kb downstream 10.0kb downstream 10000 false Chr02: 42755900-42765899 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313282 5265 Fabidae View MSA
124063776 5270 Rosid View MSA
123751487 5271 Pentapetalae View MSA
122787858 5272 Eudicot View MSA
122044505 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.54934 0.0 11.5391    
cufflinks 0.0387295 0.0 0.165426 Low Low
cufflinks 1.92236 0.0 6.69688    
cufflinks 0.638676 0.0 2.38617    
cufflinks 1.95682 0.0 6.817    
cufflinks 39.3883 0.0 105.543 High High
cufflinks 0.0172642 0.0 0.0790735 Low Low
cufflinks 0.21204 0.0 0.830653 Low  
cufflinks 2.45011 0.0 8.3416    
cufflinks 0.937        
cufflinks 34.131     High High
cufflinks 1.073        
cufflinks 10.69     High  
cufflinks 2.942        
cufflinks 4.529        
cufflinks 0.147       Low
cufflinks 39.313     High High
cufflinks 0.095     Low Low
cufflinks 0.318        
cufflinks 0.047     Low Low
cufflinks 35.126     High High
cufflinks 0.308        
cufflinks 0.599        
cufflinks 61.1     High High
cufflinks 0.086     Low Low
cufflinks 21.806     High High

0 Strain