Gene : Glyma.03G041600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12902:SF12 - PROTEIN SCAR2-RELATED Genomic Order:  416
Name:  ? Glyma.03G041600 Secondary Identifier:  ? PAC:30517581
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G041600 0.5kb upstream 0.5kb upstream 8518 true Chr03: 5283469-5291986 Glycine max
Glyma.03G041600 0.5kb upstream 0.5kb upstream 500 false Chr03: 5283469-5283968 Glycine max
Glyma.03G041600 0.5kb downstream 0.5kb downstream 8518 true Chr03: 5283969-5292486 Glycine max
Glyma.03G041600 0.5kb downstream 0.5kb downstream 500 false Chr03: 5291987-5292486 Glycine max
Glyma.03G041600 1.0kb upstream 1.0kb upstream 9018 true Chr03: 5282969-5291986 Glycine max
Glyma.03G041600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 5282969-5283968 Glycine max
Glyma.03G041600 1.0kb downstream 1.0kb downstream 9018 true Chr03: 5283969-5292986 Glycine max
Glyma.03G041600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 5291987-5292986 Glycine max
Glyma.03G041600 2.0kb upstream 2.0kb upstream 10018 true Chr03: 5281969-5291986 Glycine max
Glyma.03G041600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 5281969-5283968 Glycine max
Glyma.03G041600 2.0kb downstream 2.0kb downstream 10018 true Chr03: 5283969-5293986 Glycine max
Glyma.03G041600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 5291987-5293986 Glycine max
Glyma.03G041600 5.0kb upstream 5.0kb upstream 13018 true Chr03: 5278969-5291986 Glycine max
Glyma.03G041600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 5278969-5283968 Glycine max
Glyma.03G041600 5.0kb downstream 5.0kb downstream 13018 true Chr03: 5283969-5296986 Glycine max
Glyma.03G041600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 5291987-5296986 Glycine max
Glyma.03G041600 10.0kb upstream 10.0kb upstream 18018 true Chr03: 5273969-5291986 Glycine max
Glyma.03G041600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 5273969-5283968 Glycine max
Glyma.03G041600 10.0kb downstream 10.0kb downstream 18018 true Chr03: 5283969-5301986 Glycine max
Glyma.03G041600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 5291987-5301986 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313394 5265 Fabidae View MSA
124065878 5270 Rosid View MSA
123743804 5271 Pentapetalae View MSA
122797754 5272 Eudicot View MSA
122043443 5273 Angiosperm View MSA
121351143 5274 Embryophyte View MSA
123382024 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.3537 0.0 29.1262    
cufflinks 6.32226 0.0 19.3026    
cufflinks 7.5276 0.0 23.2082    
cufflinks 9.35542 0.0 29.1968    
cufflinks 3.98837 0.0 12.1185   Low
cufflinks 4.79616 0.0 14.5694   Low
cufflinks 8.52636 0.0 26.2591    
cufflinks 8.64585 0.0 26.8793    
cufflinks 6.15588 0.0 18.8072    
cufflinks 3.105        
cufflinks 2.04        
cufflinks 3.13        
cufflinks 2.44        
cufflinks 1.895        
cufflinks 2.067        
cufflinks 3.574        
cufflinks 0.974       Low
cufflinks 4.599       High
cufflinks 4.046        
cufflinks 4.05        
cufflinks 3.189        
cufflinks 4.22        
cufflinks 5.232       High
cufflinks 3.606        
cufflinks 3.459        
cufflinks 1.506       Low

0 Strain