Gene : Glyma.03G056800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR35499:SF2 - ALC-INTERACTING PROTEIN 1 Genomic Order:  568
Name:  ? Glyma.03G056800 Secondary Identifier:  ? PAC:30519378
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G056800 0.5kb upstream 0.5kb upstream 2646 true Chr03: 7837378-7840023 Glycine max
Glyma.03G056800 0.5kb upstream 0.5kb upstream 500 false Chr03: 7837378-7837877 Glycine max
Glyma.03G056800 0.5kb downstream 0.5kb downstream 2646 true Chr03: 7837878-7840523 Glycine max
Glyma.03G056800 0.5kb downstream 0.5kb downstream 500 false Chr03: 7840024-7840523 Glycine max
Glyma.03G056800 1.0kb upstream 1.0kb upstream 3146 true Chr03: 7836878-7840023 Glycine max
Glyma.03G056800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 7836878-7837877 Glycine max
Glyma.03G056800 1.0kb downstream 1.0kb downstream 3146 true Chr03: 7837878-7841023 Glycine max
Glyma.03G056800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 7840024-7841023 Glycine max
Glyma.03G056800 2.0kb upstream 2.0kb upstream 4146 true Chr03: 7835878-7840023 Glycine max
Glyma.03G056800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 7835878-7837877 Glycine max
Glyma.03G056800 2.0kb downstream 2.0kb downstream 4146 true Chr03: 7837878-7842023 Glycine max
Glyma.03G056800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 7840024-7842023 Glycine max
Glyma.03G056800 5.0kb upstream 5.0kb upstream 7146 true Chr03: 7832878-7840023 Glycine max
Glyma.03G056800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 7832878-7837877 Glycine max
Glyma.03G056800 5.0kb downstream 5.0kb downstream 7146 true Chr03: 7837878-7845023 Glycine max
Glyma.03G056800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 7840024-7845023 Glycine max
Glyma.03G056800 10.0kb upstream 10.0kb upstream 12146 true Chr03: 7827878-7840023 Glycine max
Glyma.03G056800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 7827878-7837877 Glycine max
Glyma.03G056800 10.0kb downstream 10.0kb downstream 12146 true Chr03: 7837878-7850023 Glycine max
Glyma.03G056800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 7840024-7850023 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309323 5265 Fabidae View MSA
124062218 5270 Rosid View MSA
123751087 5271 Pentapetalae View MSA
122789400 5272 Eudicot View MSA
122050315 5273 Angiosperm View MSA
121311850 5274 Embryophyte View MSA
123349090 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.98434 0.0 22.0716   High
cufflinks 0.14896 0.0 0.581669 Low Low
cufflinks 1.01115 0.0 3.56877    
cufflinks 0.28252 0.0 1.07265    
cufflinks 1.07775 0.0 3.80343    
cufflinks 1.51862 0.0 5.18923    
cufflinks 0.971413 0.0 3.45441    
cufflinks 0.35386 0.0 1.32953    
cufflinks 1.06262 0.0 3.74715    
cufflinks 9.876     High High
cufflinks 7.943     High  
cufflinks 4.464        
cufflinks 1.65        
cufflinks 0.707       Low
cufflinks 7.982     High  
cufflinks 4.91        
cufflinks 8.004     High  
cufflinks 1.31       Low
cufflinks 1.031       Low
cufflinks 1.814        
cufflinks 9.089     High  
cufflinks 5.058        
cufflinks 3.247        
cufflinks 11.885     High High
cufflinks 1.862        
cufflinks 12.137     High High

0 Strain