Gene : Glyma.03G242400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21089//PTHR21089:SF10 - SHIKIMATE DEHYDROGENASE Genomic Order:  2424
Name:  ? Glyma.03G242400 Secondary Identifier:  ? PAC:30519420
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ARO-PWY Glycine max pathologic  
Gmax PWY-6163 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G242400 0.5kb upstream 0.5kb upstream 8124 true Chr03: 44043853-44051976 Glycine max
Glyma.03G242400 0.5kb upstream 0.5kb upstream 500 false Chr03: 44051477-44051976 Glycine max
Glyma.03G242400 0.5kb downstream 0.5kb downstream 8124 true Chr03: 44043353-44051476 Glycine max
Glyma.03G242400 0.5kb downstream 0.5kb downstream 500 false Chr03: 44043353-44043852 Glycine max
Glyma.03G242400 1.0kb upstream 1.0kb upstream 8624 true Chr03: 44043853-44052476 Glycine max
Glyma.03G242400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 44051477-44052476 Glycine max
Glyma.03G242400 1.0kb downstream 1.0kb downstream 8624 true Chr03: 44042853-44051476 Glycine max
Glyma.03G242400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 44042853-44043852 Glycine max
Glyma.03G242400 2.0kb upstream 2.0kb upstream 9624 true Chr03: 44043853-44053476 Glycine max
Glyma.03G242400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 44051477-44053476 Glycine max
Glyma.03G242400 2.0kb downstream 2.0kb downstream 9624 true Chr03: 44041853-44051476 Glycine max
Glyma.03G242400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 44041853-44043852 Glycine max
Glyma.03G242400 5.0kb upstream 5.0kb upstream 12624 true Chr03: 44043853-44056476 Glycine max
Glyma.03G242400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 44051477-44056476 Glycine max
Glyma.03G242400 5.0kb downstream 5.0kb downstream 12624 true Chr03: 44038853-44051476 Glycine max
Glyma.03G242400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 44038853-44043852 Glycine max
Glyma.03G242400 10.0kb upstream 10.0kb upstream 17624 true Chr03: 44043853-44061476 Glycine max
Glyma.03G242400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 44051477-44061476 Glycine max
Glyma.03G242400 10.0kb downstream 10.0kb downstream 17624 true Chr03: 44033853-44051476 Glycine max
Glyma.03G242400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 44033853-44043852 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
122254087 5265 Fabidae View MSA
124070168 5270 Rosid View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.23242 0.0 29.762    
cufflinks 2.89312 0.0 22.9723    
cufflinks 4.02756 0.0 24.0623    
cufflinks 8.18495 0.0 42.5994   High
cufflinks 3.36279 0.0 19.0709    
cufflinks 2.35265 0.0 16.9643    
cufflinks 1.39559 0.0 9.81802   Low
cufflinks 2.61967 0.0 17.5745    
cufflinks 8.38221 0.0 38.9228   High
cufflinks 0.251        
cufflinks 0.55        
cufflinks 0.292        
cufflinks 0.37        
cufflinks 0.372        
cufflinks 0.45        
cufflinks 0.575        
cufflinks 0.069       Low
cufflinks 0.325        
cufflinks 0.242        
cufflinks 0.693       High
cufflinks 0.345        
cufflinks 0.394        
cufflinks 0.225        
cufflinks 0.352        
cufflinks 0.932       High
cufflinks 0.215        

0 Strain