Gene : Glyma.03G134400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR21027 - TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54 Genomic Order:  1344
Name:  ? Glyma.03G134400 Secondary Identifier:  ? PAC:30516236
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G134400 0.5kb upstream 0.5kb upstream 2387 true Chr03: 34961758-34964144 Glycine max
Glyma.03G134400 0.5kb upstream 0.5kb upstream 500 false Chr03: 34961758-34962257 Glycine max
Glyma.03G134400 0.5kb downstream 0.5kb downstream 2387 true Chr03: 34962258-34964644 Glycine max
Glyma.03G134400 0.5kb downstream 0.5kb downstream 500 false Chr03: 34964145-34964644 Glycine max
Glyma.03G134400 1.0kb upstream 1.0kb upstream 2887 true Chr03: 34961258-34964144 Glycine max
Glyma.03G134400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 34961258-34962257 Glycine max
Glyma.03G134400 1.0kb downstream 1.0kb downstream 2887 true Chr03: 34962258-34965144 Glycine max
Glyma.03G134400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 34964145-34965144 Glycine max
Glyma.03G134400 2.0kb upstream 2.0kb upstream 3887 true Chr03: 34960258-34964144 Glycine max
Glyma.03G134400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 34960258-34962257 Glycine max
Glyma.03G134400 2.0kb downstream 2.0kb downstream 3887 true Chr03: 34962258-34966144 Glycine max
Glyma.03G134400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 34964145-34966144 Glycine max
Glyma.03G134400 5.0kb upstream 5.0kb upstream 6887 true Chr03: 34957258-34964144 Glycine max
Glyma.03G134400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 34957258-34962257 Glycine max
Glyma.03G134400 5.0kb downstream 5.0kb downstream 6887 true Chr03: 34962258-34969144 Glycine max
Glyma.03G134400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 34964145-34969144 Glycine max
Glyma.03G134400 10.0kb upstream 10.0kb upstream 11887 true Chr03: 34952258-34964144 Glycine max
Glyma.03G134400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 34952258-34962257 Glycine max
Glyma.03G134400 10.0kb downstream 10.0kb downstream 11887 true Chr03: 34962258-34974144 Glycine max
Glyma.03G134400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 34964145-34974144 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301544 5265 Fabidae View MSA
124066915 5270 Rosid View MSA
123737661 5271 Pentapetalae View MSA
122790630 5272 Eudicot View MSA
122051332 5273 Angiosperm View MSA
121351548 5274 Embryophyte View MSA
123382220 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.043406 0.0 1.53622 Low  
cufflinks 0.0267712 0.0 0.957976 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low High
cufflinks 0.05     Low High
cufflinks 0.008     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.012     Low  
cufflinks 0.02     Low  
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain