Gene : Glyma.03G163900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR23315:SF119 - U-BOX DOMAIN-CONTAINING PROTEIN 3 Genomic Order:  1639
Name:  ? Glyma.03G163900 Secondary Identifier:  ? PAC:30518319
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G163900 0.5kb upstream 0.5kb upstream 5634 true Chr03: 37847849-37853482 Glycine max
Glyma.03G163900 0.5kb upstream 0.5kb upstream 500 false Chr03: 37847849-37848348 Glycine max
Glyma.03G163900 0.5kb downstream 0.5kb downstream 5634 true Chr03: 37848349-37853982 Glycine max
Glyma.03G163900 0.5kb downstream 0.5kb downstream 500 false Chr03: 37853483-37853982 Glycine max
Glyma.03G163900 1.0kb upstream 1.0kb upstream 6134 true Chr03: 37847349-37853482 Glycine max
Glyma.03G163900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 37847349-37848348 Glycine max
Glyma.03G163900 1.0kb downstream 1.0kb downstream 6134 true Chr03: 37848349-37854482 Glycine max
Glyma.03G163900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 37853483-37854482 Glycine max
Glyma.03G163900 2.0kb upstream 2.0kb upstream 7134 true Chr03: 37846349-37853482 Glycine max
Glyma.03G163900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 37846349-37848348 Glycine max
Glyma.03G163900 2.0kb downstream 2.0kb downstream 7134 true Chr03: 37848349-37855482 Glycine max
Glyma.03G163900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 37853483-37855482 Glycine max
Glyma.03G163900 5.0kb upstream 5.0kb upstream 10134 true Chr03: 37843349-37853482 Glycine max
Glyma.03G163900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 37843349-37848348 Glycine max
Glyma.03G163900 5.0kb downstream 5.0kb downstream 10134 true Chr03: 37848349-37858482 Glycine max
Glyma.03G163900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 37853483-37858482 Glycine max
Glyma.03G163900 10.0kb upstream 10.0kb upstream 15134 true Chr03: 37838349-37853482 Glycine max
Glyma.03G163900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 37838349-37848348 Glycine max
Glyma.03G163900 10.0kb downstream 10.0kb downstream 15134 true Chr03: 37848349-37863482 Glycine max
Glyma.03G163900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 37853483-37863482 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306105 5265 Fabidae View MSA
124067773 5270 Rosid View MSA
123748124 5271 Pentapetalae View MSA
122789337 5272 Eudicot View MSA
122048814 5273 Angiosperm View MSA
121345933 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.64316 0.0 11.7221   Low
cufflinks 4.46778 0.0 22.3959    
cufflinks 2.67394 0.0 14.8605    
cufflinks 4.62704 0.0 22.754    
cufflinks 1.85654 0.0 9.02229   Low
cufflinks 2.95595 0.0 16.7612    
cufflinks 6.21381 0.0 24.4096   High
cufflinks 3.56964 0.0 19.2319    
cufflinks 2.04206 0.0 9.55311    
cufflinks 0.383        
cufflinks 0.092       Low
cufflinks 0.402        
cufflinks 0.289        
cufflinks 0.245        
cufflinks 0.068       Low
cufflinks 0.325        
cufflinks 0.125        
cufflinks 0.536       High
cufflinks 0.744       High
cufflinks 0.29        
cufflinks 0.111       Low
cufflinks 0.305        
cufflinks 0.248        
cufflinks 0.101       Low
cufflinks 0.316        
cufflinks 0.13        

0 Strain