Gene : Glyma.03G167000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR17204:SF5 - PRE-MRNA-PROCESSING FACTOR 39 Genomic Order:  1670
Name:  ? Glyma.03G167000 Secondary Identifier:  ? PAC:30517035
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G167000 0.5kb upstream 0.5kb upstream 10880 true Chr03: 38138857-38149736 Glycine max
Glyma.03G167000 0.5kb upstream 0.5kb upstream 500 false Chr03: 38138857-38139356 Glycine max
Glyma.03G167000 0.5kb downstream 0.5kb downstream 10880 true Chr03: 38139357-38150236 Glycine max
Glyma.03G167000 0.5kb downstream 0.5kb downstream 500 false Chr03: 38149737-38150236 Glycine max
Glyma.03G167000 1.0kb upstream 1.0kb upstream 11380 true Chr03: 38138357-38149736 Glycine max
Glyma.03G167000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 38138357-38139356 Glycine max
Glyma.03G167000 1.0kb downstream 1.0kb downstream 11380 true Chr03: 38139357-38150736 Glycine max
Glyma.03G167000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 38149737-38150736 Glycine max
Glyma.03G167000 2.0kb upstream 2.0kb upstream 12380 true Chr03: 38137357-38149736 Glycine max
Glyma.03G167000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 38137357-38139356 Glycine max
Glyma.03G167000 2.0kb downstream 2.0kb downstream 12380 true Chr03: 38139357-38151736 Glycine max
Glyma.03G167000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 38149737-38151736 Glycine max
Glyma.03G167000 5.0kb upstream 5.0kb upstream 15380 true Chr03: 38134357-38149736 Glycine max
Glyma.03G167000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 38134357-38139356 Glycine max
Glyma.03G167000 5.0kb downstream 5.0kb downstream 15380 true Chr03: 38139357-38154736 Glycine max
Glyma.03G167000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 38149737-38154736 Glycine max
Glyma.03G167000 10.0kb upstream 10.0kb upstream 20380 true Chr03: 38129357-38149736 Glycine max
Glyma.03G167000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 38129357-38139356 Glycine max
Glyma.03G167000 10.0kb downstream 10.0kb downstream 20380 true Chr03: 38139357-38159736 Glycine max
Glyma.03G167000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 38149737-38159736 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305271 5265 Fabidae View MSA
124068897 5270 Rosid View MSA
123746236 5271 Pentapetalae View MSA
122794509 5272 Eudicot View MSA
122048891 5273 Angiosperm View MSA
121349849 5274 Embryophyte View MSA
123426942 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.1236 0.0 67.4102 High  
cufflinks 23.1436 0.0 64.2966 High  
cufflinks 30.8653 0.0 88.9235 High High
cufflinks 18.9261 0.0 51.7369    
cufflinks 18.5785 0.0 50.7346    
cufflinks 11.343 0.0 30.3079   Low
cufflinks 20.3514 0.0 55.9222    
cufflinks 17.1848 0.0 46.6587    
cufflinks 17.9494 0.0 48.8809    
cufflinks 5.502       Low
cufflinks 7.873     High  
cufflinks 11.35     High High
cufflinks 6.805        
cufflinks 8.01     High  
cufflinks 9.252     High  
cufflinks 8.253     High  
cufflinks 6.67     High  
cufflinks 12.627     High High
cufflinks 10.86     High High
cufflinks 9.14     High  
cufflinks 7.633     High  
cufflinks 8.57     High  
cufflinks 8.959     High  
cufflinks 6.915     High  
cufflinks 8.567     High  
cufflinks 6.533     High Low

0 Strain