Gene : Glyma.03G178100 G. max Wm82.a2.v1
Defline:  (1 of 35) KOG0978 - E3 ubiquitin ligase involved in syntaxin degradation Genomic Order:  1781
Name:  ? Glyma.03G178100 Secondary Identifier:  ? PAC:30516349
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G178100 0.5kb upstream 0.5kb upstream 5255 true Chr03: 39070182-39075436 Glycine max
Glyma.03G178100 0.5kb upstream 0.5kb upstream 500 false Chr03: 39074937-39075436 Glycine max
Glyma.03G178100 0.5kb downstream 0.5kb downstream 5255 true Chr03: 39069682-39074936 Glycine max
Glyma.03G178100 0.5kb downstream 0.5kb downstream 500 false Chr03: 39069682-39070181 Glycine max
Glyma.03G178100 1.0kb upstream 1.0kb upstream 5755 true Chr03: 39070182-39075936 Glycine max
Glyma.03G178100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39074937-39075936 Glycine max
Glyma.03G178100 1.0kb downstream 1.0kb downstream 5755 true Chr03: 39069182-39074936 Glycine max
Glyma.03G178100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39069182-39070181 Glycine max
Glyma.03G178100 2.0kb upstream 2.0kb upstream 6755 true Chr03: 39070182-39076936 Glycine max
Glyma.03G178100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39074937-39076936 Glycine max
Glyma.03G178100 2.0kb downstream 2.0kb downstream 6755 true Chr03: 39068182-39074936 Glycine max
Glyma.03G178100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39068182-39070181 Glycine max
Glyma.03G178100 5.0kb upstream 5.0kb upstream 9755 true Chr03: 39070182-39079936 Glycine max
Glyma.03G178100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39074937-39079936 Glycine max
Glyma.03G178100 5.0kb downstream 5.0kb downstream 9755 true Chr03: 39065182-39074936 Glycine max
Glyma.03G178100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39065182-39070181 Glycine max
Glyma.03G178100 10.0kb upstream 10.0kb upstream 14755 true Chr03: 39070182-39084936 Glycine max
Glyma.03G178100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39074937-39084936 Glycine max
Glyma.03G178100 10.0kb downstream 10.0kb downstream 14755 true Chr03: 39060182-39074936 Glycine max
Glyma.03G178100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39060182-39070181 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305697 5265 Fabidae View MSA
124067552 5270 Rosid View MSA
123746555 5271 Pentapetalae View MSA
122793282 5272 Eudicot View MSA
122043057 5273 Angiosperm View MSA
121310071 5274 Embryophyte View MSA
123347664 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.369064 0.0 1.67484   Low
cufflinks 11.6925 0.0 40.206   High
cufflinks 0.953899 0.0 4.62053   Low
cufflinks 2.66767 0.0 11.0445    
cufflinks 3.85906 0.0 14.4992    
cufflinks 2.64047 0.0 9.39373    
cufflinks 7.72344 0.0 26.6033    
cufflinks 3.5918 0.0 13.6281    
cufflinks 3.4357 0.0 13.2007    
cufflinks 1.322        
cufflinks 0.124       Low
cufflinks 1.268        
cufflinks 2.328        
cufflinks 2.763        
cufflinks 0.022     Low Low
cufflinks 1.238        
cufflinks 0.437        
cufflinks 1.643        
cufflinks 5.142       High
cufflinks 0.95        
cufflinks 0.127       Low
cufflinks 1.362        
cufflinks 3.338       High
cufflinks 0.057     Low Low
cufflinks 1.062        
cufflinks 0.268        

0 Strain