Gene : Glyma.03G178000 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR11652:SF16 - 40S RIBOSOMAL PROTEIN S23-1 Genomic Order:  1780
Name:  ? Glyma.03G178000 Secondary Identifier:  ? PAC:30517006
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G178000 0.5kb upstream 0.5kb upstream 2302 true Chr03: 39064991-39067292 Glycine max
Glyma.03G178000 0.5kb upstream 0.5kb upstream 500 false Chr03: 39066793-39067292 Glycine max
Glyma.03G178000 0.5kb downstream 0.5kb downstream 2302 true Chr03: 39064491-39066792 Glycine max
Glyma.03G178000 0.5kb downstream 0.5kb downstream 500 false Chr03: 39064491-39064990 Glycine max
Glyma.03G178000 1.0kb upstream 1.0kb upstream 2802 true Chr03: 39064991-39067792 Glycine max
Glyma.03G178000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39066793-39067792 Glycine max
Glyma.03G178000 1.0kb downstream 1.0kb downstream 2802 true Chr03: 39063991-39066792 Glycine max
Glyma.03G178000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39063991-39064990 Glycine max
Glyma.03G178000 2.0kb upstream 2.0kb upstream 3802 true Chr03: 39064991-39068792 Glycine max
Glyma.03G178000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39066793-39068792 Glycine max
Glyma.03G178000 2.0kb downstream 2.0kb downstream 3802 true Chr03: 39062991-39066792 Glycine max
Glyma.03G178000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39062991-39064990 Glycine max
Glyma.03G178000 5.0kb upstream 5.0kb upstream 6802 true Chr03: 39064991-39071792 Glycine max
Glyma.03G178000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39066793-39071792 Glycine max
Glyma.03G178000 5.0kb downstream 5.0kb downstream 6802 true Chr03: 39059991-39066792 Glycine max
Glyma.03G178000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39059991-39064990 Glycine max
Glyma.03G178000 10.0kb upstream 10.0kb upstream 11802 true Chr03: 39064991-39076792 Glycine max
Glyma.03G178000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39066793-39076792 Glycine max
Glyma.03G178000 10.0kb downstream 10.0kb downstream 11802 true Chr03: 39054991-39066792 Glycine max
Glyma.03G178000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39054991-39064990 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314244 5265 Fabidae View MSA
124070062 5270 Rosid View MSA
123740818 5271 Pentapetalae View MSA
122794573 5272 Eudicot View MSA
122046151 5273 Angiosperm View MSA
121344196 5274 Embryophyte View MSA
123424660 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.336 0.0 176.498 High  
cufflinks 49.9923 0.0 173.7 High  
cufflinks 24.6984 0.0 88.2646 High Low
cufflinks 40.64 0.0 141.531 High  
cufflinks 128.885 0.0 530.306 High High
cufflinks 106.256 0.0 413.265 High  
cufflinks 184.598 0.0 735.774 High High
cufflinks 53.1207 0.0 187.015 High  
cufflinks 77.2119 0.0 282.516 High  
cufflinks 12.458     High  
cufflinks 5.633     High  
cufflinks 10.288     High  
cufflinks 39.261     High High
cufflinks 62.178     High High
cufflinks 4.477       Low
cufflinks 9.701     High  
cufflinks 9.232     High  
cufflinks 10.315     High  
cufflinks 12.76     High  
cufflinks 7.428     High  
cufflinks 8.712     High  
cufflinks 7.769     High  
cufflinks 11.126     High  
cufflinks 6.485     High  
cufflinks 8.65     High  
cufflinks 9.621     High  

0 Strain