Gene : Glyma.03G183400 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR11476:SF5 - CLASS II AARS AND BIOTIN SYNTHETASES SUPERFAMILY PROTEIN-RELATED Genomic Order:  1834
Name:  ? Glyma.03G183400 Secondary Identifier:  ? PAC:30517815
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G183400 0.5kb upstream 0.5kb upstream 13755 true Chr03: 39523255-39537009 Glycine max
Glyma.03G183400 0.5kb upstream 0.5kb upstream 500 false Chr03: 39523255-39523754 Glycine max
Glyma.03G183400 0.5kb downstream 0.5kb downstream 13755 true Chr03: 39523755-39537509 Glycine max
Glyma.03G183400 0.5kb downstream 0.5kb downstream 500 false Chr03: 39537010-39537509 Glycine max
Glyma.03G183400 1.0kb upstream 1.0kb upstream 14255 true Chr03: 39522755-39537009 Glycine max
Glyma.03G183400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39522755-39523754 Glycine max
Glyma.03G183400 1.0kb downstream 1.0kb downstream 14255 true Chr03: 39523755-39538009 Glycine max
Glyma.03G183400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39537010-39538009 Glycine max
Glyma.03G183400 2.0kb upstream 2.0kb upstream 15255 true Chr03: 39521755-39537009 Glycine max
Glyma.03G183400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39521755-39523754 Glycine max
Glyma.03G183400 2.0kb downstream 2.0kb downstream 15255 true Chr03: 39523755-39539009 Glycine max
Glyma.03G183400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39537010-39539009 Glycine max
Glyma.03G183400 5.0kb upstream 5.0kb upstream 18255 true Chr03: 39518755-39537009 Glycine max
Glyma.03G183400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39518755-39523754 Glycine max
Glyma.03G183400 5.0kb downstream 5.0kb downstream 18255 true Chr03: 39523755-39542009 Glycine max
Glyma.03G183400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39537010-39542009 Glycine max
Glyma.03G183400 10.0kb upstream 10.0kb upstream 23255 true Chr03: 39513755-39537009 Glycine max
Glyma.03G183400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39513755-39523754 Glycine max
Glyma.03G183400 10.0kb downstream 10.0kb downstream 23255 true Chr03: 39523755-39547009 Glycine max
Glyma.03G183400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39537010-39547009 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303322 5265 Fabidae View MSA
124069172 5270 Rosid View MSA
123739559 5271 Pentapetalae View MSA
122792579 5272 Eudicot View MSA
122042038 5273 Angiosperm View MSA
121344697 5274 Embryophyte View MSA
123424484 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.3655 0.0 43.5924   High
cufflinks 12.6832 0.0 44.5727   High
cufflinks 4.44984 0.0 18.9457    
cufflinks 7.10381 0.0 26.8745    
cufflinks 5.76712 0.0 23.019    
cufflinks 3.64602 0.0 14.2239   Low
cufflinks 8.01638 0.0 29.9108    
cufflinks 8.28931 0.0 30.5813    
cufflinks 4.53423 0.0 19.1799    
cufflinks 0.566        
cufflinks 0.129       Low
cufflinks 0.336        
cufflinks 0.283        
cufflinks 0.355        
cufflinks 0.338        
cufflinks 1.511       High
cufflinks 0.162        
cufflinks 0.406        
cufflinks 0.758        
cufflinks 1.731       High
cufflinks 0.106       Low
cufflinks 1.487       High
cufflinks 1.227       High
cufflinks 0.11       Low
cufflinks 1.618       High
cufflinks 0.14       Low

0 Strain