Gene : Glyma.03G188900 G. max Wm82.a2.v1
Defline:  (1 of 23) PTHR11254 - HECT DOMAIN UBIQUITIN-PROTEIN LIGASE Genomic Order:  1889
Name:  ? Glyma.03G188900 Secondary Identifier:  ? PAC:30518765
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G188900 0.5kb upstream 0.5kb upstream 9730 true Chr03: 39990435-40000164 Glycine max
Glyma.03G188900 0.5kb upstream 0.5kb upstream 500 false Chr03: 39999665-40000164 Glycine max
Glyma.03G188900 0.5kb downstream 0.5kb downstream 9730 true Chr03: 39989935-39999664 Glycine max
Glyma.03G188900 0.5kb downstream 0.5kb downstream 500 false Chr03: 39989935-39990434 Glycine max
Glyma.03G188900 1.0kb upstream 1.0kb upstream 10230 true Chr03: 39990435-40000664 Glycine max
Glyma.03G188900 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39999665-40000664 Glycine max
Glyma.03G188900 1.0kb downstream 1.0kb downstream 10230 true Chr03: 39989435-39999664 Glycine max
Glyma.03G188900 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39989435-39990434 Glycine max
Glyma.03G188900 2.0kb upstream 2.0kb upstream 11230 true Chr03: 39990435-40001664 Glycine max
Glyma.03G188900 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39999665-40001664 Glycine max
Glyma.03G188900 2.0kb downstream 2.0kb downstream 11230 true Chr03: 39988435-39999664 Glycine max
Glyma.03G188900 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39988435-39990434 Glycine max
Glyma.03G188900 5.0kb upstream 5.0kb upstream 14230 true Chr03: 39990435-40004664 Glycine max
Glyma.03G188900 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39999665-40004664 Glycine max
Glyma.03G188900 5.0kb downstream 5.0kb downstream 14230 true Chr03: 39985435-39999664 Glycine max
Glyma.03G188900 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39985435-39990434 Glycine max
Glyma.03G188900 10.0kb upstream 10.0kb upstream 19230 true Chr03: 39990435-40009664 Glycine max
Glyma.03G188900 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39999665-40009664 Glycine max
Glyma.03G188900 10.0kb downstream 10.0kb downstream 19230 true Chr03: 39980435-39999664 Glycine max
Glyma.03G188900 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39980435-39990434 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304652 5265 Fabidae View MSA
124065760 5270 Rosid View MSA
123737097 5271 Pentapetalae View MSA
122793139 5272 Eudicot View MSA
122047566 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121351552 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.00522 0.0 6.04882    
cufflinks 1.56751 0.0 4.88975    
cufflinks 4.0958 0.0 11.3025   High
cufflinks 2.32463 0.0 6.85759    
cufflinks 1.28867 0.0 4.14751   Low
cufflinks 1.94268 0.0 5.87408    
cufflinks 1.47799 0.0 4.67093    
cufflinks 1.92701 0.0 5.83421    
cufflinks 1.55797 0.0 4.86654    
cufflinks 0.836       Low
cufflinks 1.68        
cufflinks 1.934       High
cufflinks 0.98       Low
cufflinks 0.886       Low
cufflinks 1.247        
cufflinks 1.411        
cufflinks 0.867       Low
cufflinks 2.015       High
cufflinks 1.321        
cufflinks 1.681        
cufflinks 1.498        
cufflinks 1.853       High
cufflinks 1.329        
cufflinks 1.761        
cufflinks 1.457        
cufflinks 1.135        

0 Strain