Gene : Glyma.03G188600 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR21737:SF4 - CACTIN Genomic Order:  1886
Name:  ? Glyma.03G188600 Secondary Identifier:  ? PAC:30515973
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G188600 0.5kb upstream 0.5kb upstream 6615 true Chr03: 39965455-39972069 Glycine max
Glyma.03G188600 0.5kb upstream 0.5kb upstream 500 false Chr03: 39965455-39965954 Glycine max
Glyma.03G188600 0.5kb downstream 0.5kb downstream 6615 true Chr03: 39965955-39972569 Glycine max
Glyma.03G188600 0.5kb downstream 0.5kb downstream 500 false Chr03: 39972070-39972569 Glycine max
Glyma.03G188600 1.0kb upstream 1.0kb upstream 7115 true Chr03: 39964955-39972069 Glycine max
Glyma.03G188600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 39964955-39965954 Glycine max
Glyma.03G188600 1.0kb downstream 1.0kb downstream 7115 true Chr03: 39965955-39973069 Glycine max
Glyma.03G188600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 39972070-39973069 Glycine max
Glyma.03G188600 2.0kb upstream 2.0kb upstream 8115 true Chr03: 39963955-39972069 Glycine max
Glyma.03G188600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 39963955-39965954 Glycine max
Glyma.03G188600 2.0kb downstream 2.0kb downstream 8115 true Chr03: 39965955-39974069 Glycine max
Glyma.03G188600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 39972070-39974069 Glycine max
Glyma.03G188600 5.0kb upstream 5.0kb upstream 11115 true Chr03: 39960955-39972069 Glycine max
Glyma.03G188600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 39960955-39965954 Glycine max
Glyma.03G188600 5.0kb downstream 5.0kb downstream 11115 true Chr03: 39965955-39977069 Glycine max
Glyma.03G188600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 39972070-39977069 Glycine max
Glyma.03G188600 10.0kb upstream 10.0kb upstream 16115 true Chr03: 39955955-39972069 Glycine max
Glyma.03G188600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 39955955-39965954 Glycine max
Glyma.03G188600 10.0kb downstream 10.0kb downstream 16115 true Chr03: 39965955-39982069 Glycine max
Glyma.03G188600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 39972070-39982069 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311471 5265 Fabidae View MSA
124062313 5270 Rosid View MSA
123746898 5271 Pentapetalae View MSA
122792655 5272 Eudicot View MSA
122043327 5273 Angiosperm View MSA
121346365 5274 Embryophyte View MSA
123428349 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.22419 0.0 24.9993   High
cufflinks 5.11905 0.0 18.6097    
cufflinks 6.54759 0.0 22.825   High
cufflinks 4.27325 0.0 15.9372    
cufflinks 4.63748 0.0 16.9766    
cufflinks 4.08461 0.0 15.449    
cufflinks 3.50625 0.0 11.8475   Low
cufflinks 4.91938 0.0 17.9667    
cufflinks 3.76302 0.0 12.4737    
cufflinks 2.004        
cufflinks 2.388       High
cufflinks 1.765        
cufflinks 1.593       Low
cufflinks 1.533       Low
cufflinks 1.532       Low
cufflinks 2.416       High
cufflinks 2.471       High
cufflinks 1.709        
cufflinks 1.874        
cufflinks 1.99        
cufflinks 1.802        
cufflinks 2.222        
cufflinks 1.939        
cufflinks 2.149        
cufflinks 1.886        
cufflinks 2.595       High

0 Strain