Gene : Glyma.03G200400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR12300//PTHR12300:SF44 - HVA22-LIKE PROTEINS Genomic Order:  2004
Name:  ? Glyma.03G200400 Secondary Identifier:  ? PAC:30517008
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G200400 0.5kb upstream 0.5kb upstream 2709 true Chr03: 40928945-40931653 Glycine max
Glyma.03G200400 0.5kb upstream 0.5kb upstream 500 false Chr03: 40928945-40929444 Glycine max
Glyma.03G200400 0.5kb downstream 0.5kb downstream 2709 true Chr03: 40929445-40932153 Glycine max
Glyma.03G200400 0.5kb downstream 0.5kb downstream 500 false Chr03: 40931654-40932153 Glycine max
Glyma.03G200400 1.0kb upstream 1.0kb upstream 3209 true Chr03: 40928445-40931653 Glycine max
Glyma.03G200400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40928445-40929444 Glycine max
Glyma.03G200400 1.0kb downstream 1.0kb downstream 3209 true Chr03: 40929445-40932653 Glycine max
Glyma.03G200400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40931654-40932653 Glycine max
Glyma.03G200400 2.0kb upstream 2.0kb upstream 4209 true Chr03: 40927445-40931653 Glycine max
Glyma.03G200400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40927445-40929444 Glycine max
Glyma.03G200400 2.0kb downstream 2.0kb downstream 4209 true Chr03: 40929445-40933653 Glycine max
Glyma.03G200400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 40931654-40933653 Glycine max
Glyma.03G200400 5.0kb upstream 5.0kb upstream 7209 true Chr03: 40924445-40931653 Glycine max
Glyma.03G200400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40924445-40929444 Glycine max
Glyma.03G200400 5.0kb downstream 5.0kb downstream 7209 true Chr03: 40929445-40936653 Glycine max
Glyma.03G200400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 40931654-40936653 Glycine max
Glyma.03G200400 10.0kb upstream 10.0kb upstream 12209 true Chr03: 40919445-40931653 Glycine max
Glyma.03G200400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40919445-40929444 Glycine max
Glyma.03G200400 10.0kb downstream 10.0kb downstream 12209 true Chr03: 40929445-40941653 Glycine max
Glyma.03G200400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 40931654-40941653 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314306 5265 Fabidae View MSA
124074738 5270 Rosid View MSA
123753523 5271 Pentapetalae View MSA
122794920 5272 Eudicot View MSA
122050664 5273 Angiosperm View MSA
121348530 5274 Embryophyte View MSA
123427624 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.756353 0.0 2.86995   Low
cufflinks 1.68528 0.0 6.15047    
cufflinks 5.01043 0.0 16.5241    
cufflinks 0.675688 0.0 2.5738   Low
cufflinks 3.585 0.0 12.3159    
cufflinks 15.6051 0.0 44.2945   High
cufflinks 2.63533 0.0 9.31388    
cufflinks 1.69481 0.0 6.17784    
cufflinks 4.33507 0.0 14.6043    
cufflinks 0.975        
cufflinks 16.545     High High
cufflinks 2.057        
cufflinks 3.335        
cufflinks 2.211        
cufflinks 1.844        
cufflinks 0.709        
cufflinks 6.996     High  
cufflinks 0.644        
cufflinks 0.892        
cufflinks 0.806        
cufflinks 8.139     High High
cufflinks 0.516       Low
cufflinks 0.384       Low
cufflinks 14.443     High High
cufflinks 0.447       Low
cufflinks 11.186     High High

0 Strain