Gene : Glyma.03G197100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10553//PTHR10553:SF9 - SMALL NUCLEAR RIBONUCLEOPROTEIN Genomic Order:  1971
Name:  ? Glyma.03G197100 Secondary Identifier:  ? PAC:30519238
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G197100 0.5kb upstream 0.5kb upstream 1897 true Chr03: 40659338-40661234 Glycine max
Glyma.03G197100 0.5kb upstream 0.5kb upstream 500 false Chr03: 40660735-40661234 Glycine max
Glyma.03G197100 0.5kb downstream 0.5kb downstream 1897 true Chr03: 40658838-40660734 Glycine max
Glyma.03G197100 0.5kb downstream 0.5kb downstream 500 false Chr03: 40658838-40659337 Glycine max
Glyma.03G197100 1.0kb upstream 1.0kb upstream 2397 true Chr03: 40659338-40661734 Glycine max
Glyma.03G197100 1.0kb upstream 1.0kb upstream 1000 false Chr03: 40660735-40661734 Glycine max
Glyma.03G197100 1.0kb downstream 1.0kb downstream 2397 true Chr03: 40658338-40660734 Glycine max
Glyma.03G197100 1.0kb downstream 1.0kb downstream 1000 false Chr03: 40658338-40659337 Glycine max
Glyma.03G197100 2.0kb upstream 2.0kb upstream 3397 true Chr03: 40659338-40662734 Glycine max
Glyma.03G197100 2.0kb upstream 2.0kb upstream 2000 false Chr03: 40660735-40662734 Glycine max
Glyma.03G197100 2.0kb downstream 2.0kb downstream 3397 true Chr03: 40657338-40660734 Glycine max
Glyma.03G197100 2.0kb downstream 2.0kb downstream 2000 false Chr03: 40657338-40659337 Glycine max
Glyma.03G197100 5.0kb upstream 5.0kb upstream 6397 true Chr03: 40659338-40665734 Glycine max
Glyma.03G197100 5.0kb upstream 5.0kb upstream 5000 false Chr03: 40660735-40665734 Glycine max
Glyma.03G197100 5.0kb downstream 5.0kb downstream 6397 true Chr03: 40654338-40660734 Glycine max
Glyma.03G197100 5.0kb downstream 5.0kb downstream 5000 false Chr03: 40654338-40659337 Glycine max
Glyma.03G197100 10.0kb upstream 10.0kb upstream 11397 true Chr03: 40659338-40670734 Glycine max
Glyma.03G197100 10.0kb upstream 10.0kb upstream 10000 false Chr03: 40660735-40670734 Glycine max
Glyma.03G197100 10.0kb downstream 10.0kb downstream 11397 true Chr03: 40649338-40660734 Glycine max
Glyma.03G197100 10.0kb downstream 10.0kb downstream 10000 false Chr03: 40649338-40659337 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310091 5265 Fabidae View MSA
124063734 5270 Rosid View MSA
123743762 5271 Pentapetalae View MSA
122792328 5272 Eudicot View MSA
122043124 5273 Angiosperm View MSA
121347194 5274 Embryophyte View MSA
123426460 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 51.917 0.0 138.514 High Low
cufflinks 103.954 0.0 284.49 High High
cufflinks 54.9426 0.0 146.63 High Low
cufflinks 70.3645 0.0 188.641 High  
cufflinks 84.4926 0.0 227.983 High  
cufflinks 90.2332 0.0 244.498 High  
cufflinks 100.661 0.0 274.149 High  
cufflinks 96.2896 0.0 262.122 High  
cufflinks 66.6637 0.0 178.387 High  
cufflinks 40.311     High  
cufflinks 8.174     High Low
cufflinks 31.83     High  
cufflinks 51.242     High High
cufflinks 69.853     High High
cufflinks 7.597     High Low
cufflinks 31.693     High  
cufflinks 20.832     High  
cufflinks 45.463     High  
cufflinks 50.709     High High
cufflinks 22.884     High  
cufflinks 13.919     High  
cufflinks 29.342     High  
cufflinks 37.245     High  
cufflinks 14.298     High  
cufflinks 28.851     High  
cufflinks 19.855     High  

0 Strain