Gene : Glyma.03G161400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31529:SF10 - LOB DOMAIN-CONTAINING PROTEIN 16 Genomic Order:  1614
Name:  ? Glyma.03G161400 Secondary Identifier:  ? PAC:30517237
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G161400 0.5kb upstream 0.5kb upstream 2581 true Chr03: 37635005-37637585 Glycine max
Glyma.03G161400 0.5kb upstream 0.5kb upstream 500 false Chr03: 37635005-37635504 Glycine max
Glyma.03G161400 0.5kb downstream 0.5kb downstream 2581 true Chr03: 37635505-37638085 Glycine max
Glyma.03G161400 0.5kb downstream 0.5kb downstream 500 false Chr03: 37637586-37638085 Glycine max
Glyma.03G161400 1.0kb upstream 1.0kb upstream 3081 true Chr03: 37634505-37637585 Glycine max
Glyma.03G161400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 37634505-37635504 Glycine max
Glyma.03G161400 1.0kb downstream 1.0kb downstream 3081 true Chr03: 37635505-37638585 Glycine max
Glyma.03G161400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 37637586-37638585 Glycine max
Glyma.03G161400 2.0kb upstream 2.0kb upstream 4081 true Chr03: 37633505-37637585 Glycine max
Glyma.03G161400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 37633505-37635504 Glycine max
Glyma.03G161400 2.0kb downstream 2.0kb downstream 4081 true Chr03: 37635505-37639585 Glycine max
Glyma.03G161400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 37637586-37639585 Glycine max
Glyma.03G161400 5.0kb upstream 5.0kb upstream 7081 true Chr03: 37630505-37637585 Glycine max
Glyma.03G161400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 37630505-37635504 Glycine max
Glyma.03G161400 5.0kb downstream 5.0kb downstream 7081 true Chr03: 37635505-37642585 Glycine max
Glyma.03G161400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 37637586-37642585 Glycine max
Glyma.03G161400 10.0kb upstream 10.0kb upstream 12081 true Chr03: 37625505-37637585 Glycine max
Glyma.03G161400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 37625505-37635504 Glycine max
Glyma.03G161400 10.0kb downstream 10.0kb downstream 12081 true Chr03: 37635505-37647585 Glycine max
Glyma.03G161400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 37637586-37647585 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027059 5273 Angiosperm View MSA
122245413 5265 Fabidae Singleton cluster - no MSA
123989551 5270 Rosid Singleton cluster - no MSA
123564646 5271 Pentapetalae Singleton cluster - no MSA
122599415 5272 Eudicot Singleton cluster - no MSA
121351593 5274 Embryophyte View MSA
123382239 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0397552 0.0 0.169416 Low Low
cufflinks 0.626915 0.0 2.34429    
cufflinks 0.154084 0.0 0.609763 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 4.14174 0.0 13.1888   High
cufflinks 1.15616 0.0 4.18305    
cufflinks 0.0704375 0.0 0.288939 Low  
cufflinks 0.127605 0.0 0.509184 Low  
cufflinks 2.58525 0.0 8.73306   High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.063        
cufflinks 0.151        
cufflinks 1.145       High
cufflinks 1.661       High
cufflinks 0.028     Low  
cufflinks 0.017     Low  
cufflinks 0.245        
cufflinks 0.058     Low  
cufflinks 0.104        
cufflinks 0.008     Low Low
cufflinks 0.248        
cufflinks 0.029     Low  
cufflinks 0.009     Low Low
cufflinks 0.038     Low  
cufflinks 0.018     Low  
cufflinks 0.33        

0 Strain