Gene : Glyma.03G173400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31689:SF0 - DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC Genomic Order:  1734
Name:  ? Glyma.03G173400 Secondary Identifier:  ? PAC:30518580
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5097 Glycine max pathologic  
Gmax PWY-724 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G173400 0.5kb upstream 0.5kb upstream 4550 true Chr03: 38746766-38751315 Glycine max
Glyma.03G173400 0.5kb upstream 0.5kb upstream 500 false Chr03: 38750816-38751315 Glycine max
Glyma.03G173400 0.5kb downstream 0.5kb downstream 4550 true Chr03: 38746266-38750815 Glycine max
Glyma.03G173400 0.5kb downstream 0.5kb downstream 500 false Chr03: 38746266-38746765 Glycine max
Glyma.03G173400 1.0kb upstream 1.0kb upstream 5050 true Chr03: 38746766-38751815 Glycine max
Glyma.03G173400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 38750816-38751815 Glycine max
Glyma.03G173400 1.0kb downstream 1.0kb downstream 5050 true Chr03: 38745766-38750815 Glycine max
Glyma.03G173400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 38745766-38746765 Glycine max
Glyma.03G173400 2.0kb upstream 2.0kb upstream 6050 true Chr03: 38746766-38752815 Glycine max
Glyma.03G173400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 38750816-38752815 Glycine max
Glyma.03G173400 2.0kb downstream 2.0kb downstream 6050 true Chr03: 38744766-38750815 Glycine max
Glyma.03G173400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 38744766-38746765 Glycine max
Glyma.03G173400 5.0kb upstream 5.0kb upstream 9050 true Chr03: 38746766-38755815 Glycine max
Glyma.03G173400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 38750816-38755815 Glycine max
Glyma.03G173400 5.0kb downstream 5.0kb downstream 9050 true Chr03: 38741766-38750815 Glycine max
Glyma.03G173400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 38741766-38746765 Glycine max
Glyma.03G173400 10.0kb upstream 10.0kb upstream 14050 true Chr03: 38746766-38760815 Glycine max
Glyma.03G173400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 38750816-38760815 Glycine max
Glyma.03G173400 10.0kb downstream 10.0kb downstream 14050 true Chr03: 38736766-38750815 Glycine max
Glyma.03G173400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 38736766-38746765 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306016 5265 Fabidae View MSA
124061653 5270 Rosid View MSA
123740208 5271 Pentapetalae View MSA
122785704 5272 Eudicot View MSA
122047257 5273 Angiosperm View MSA
121347599 5274 Embryophyte View MSA
123423863 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 43.4802 0.0 118.815 High  
cufflinks 39.0253 0.0 105.732 High  
cufflinks 20.3892 0.0 54.4229 High Low
cufflinks 41.7618 0.0 113.66 High  
cufflinks 48.2938 0.0 133.152 High  
cufflinks 30.4479 0.0 81.6808 High  
cufflinks 48.4176 0.0 133.257 High  
cufflinks 39.1023 0.0 106.035 High  
cufflinks 37.9227 0.0 102.663 High  
cufflinks 9.309     High  
cufflinks 2.757       Low
cufflinks 9.571     High  
cufflinks 12.202     High  
cufflinks 14.701     High High
cufflinks 3.875       Low
cufflinks 11.31     High  
cufflinks 6.999     High  
cufflinks 10.387     High  
cufflinks 12.731     High  
cufflinks 9.343     High  
cufflinks 3.969       Low
cufflinks 10.524     High  
cufflinks 12.137     High  
cufflinks 3.485       Low
cufflinks 9.981     High  
cufflinks 6.23        

0 Strain