Gene : Glyma.03G142600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR16052:SF0 - TBCC DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1426
Name:  ? Glyma.03G142600 Secondary Identifier:  ? PAC:30516345
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G142600 0.5kb upstream 0.5kb upstream 8663 true Chr03: 35842879-35851541 Glycine max
Glyma.03G142600 0.5kb upstream 0.5kb upstream 500 false Chr03: 35842879-35843378 Glycine max
Glyma.03G142600 0.5kb downstream 0.5kb downstream 8663 true Chr03: 35843379-35852041 Glycine max
Glyma.03G142600 0.5kb downstream 0.5kb downstream 500 false Chr03: 35851542-35852041 Glycine max
Glyma.03G142600 1.0kb upstream 1.0kb upstream 9163 true Chr03: 35842379-35851541 Glycine max
Glyma.03G142600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 35842379-35843378 Glycine max
Glyma.03G142600 1.0kb downstream 1.0kb downstream 9163 true Chr03: 35843379-35852541 Glycine max
Glyma.03G142600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 35851542-35852541 Glycine max
Glyma.03G142600 2.0kb upstream 2.0kb upstream 10163 true Chr03: 35841379-35851541 Glycine max
Glyma.03G142600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 35841379-35843378 Glycine max
Glyma.03G142600 2.0kb downstream 2.0kb downstream 10163 true Chr03: 35843379-35853541 Glycine max
Glyma.03G142600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 35851542-35853541 Glycine max
Glyma.03G142600 5.0kb upstream 5.0kb upstream 13163 true Chr03: 35838379-35851541 Glycine max
Glyma.03G142600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 35838379-35843378 Glycine max
Glyma.03G142600 5.0kb downstream 5.0kb downstream 13163 true Chr03: 35843379-35856541 Glycine max
Glyma.03G142600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 35851542-35856541 Glycine max
Glyma.03G142600 10.0kb upstream 10.0kb upstream 18163 true Chr03: 35833379-35851541 Glycine max
Glyma.03G142600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 35833379-35843378 Glycine max
Glyma.03G142600 10.0kb downstream 10.0kb downstream 18163 true Chr03: 35843379-35861541 Glycine max
Glyma.03G142600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 35851542-35861541 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309249 5265 Fabidae View MSA
124060607 5270 Rosid View MSA
123737607 5271 Pentapetalae View MSA
122797393 5272 Eudicot View MSA
122043018 5273 Angiosperm View MSA
121349470 5274 Embryophyte View MSA
123427558 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.07 0.0 44.78    
cufflinks 10.5498 0.0 31.9185   Low
cufflinks 16.2039 0.0 58.0316    
cufflinks 13.8404 0.0 41.0208    
cufflinks 17.8519 0.0 63.7233   High
cufflinks 14.5873 0.0 43.1311    
cufflinks 9.15683 0.0 27.991   Low
cufflinks 18.8964 0.0 75.7363   High
cufflinks 13.1795 0.0 45.8751    
cufflinks 1.216        
cufflinks 1.338        
cufflinks 1.187        
cufflinks 1.609       High
cufflinks 1.846       High
cufflinks 0.92        
cufflinks 0.976        
cufflinks 1.076        
cufflinks 1.132        
cufflinks 1.206        
cufflinks 0.788       Low
cufflinks 1.376        
cufflinks 0.931        
cufflinks 0.859       Low
cufflinks 1.798       High
cufflinks 0.841       Low
cufflinks 1.492        

0 Strain