Gene : Glyma.03G142700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR16052:SF0 - TBCC DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1427
Name:  ? Glyma.03G142700 Secondary Identifier:  ? PAC:30517315
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G142700 0.5kb upstream 0.5kb upstream 9887 true Chr03: 35851567-35861453 Glycine max
Glyma.03G142700 0.5kb upstream 0.5kb upstream 500 false Chr03: 35851567-35852066 Glycine max
Glyma.03G142700 0.5kb downstream 0.5kb downstream 9887 true Chr03: 35852067-35861953 Glycine max
Glyma.03G142700 0.5kb downstream 0.5kb downstream 500 false Chr03: 35861454-35861953 Glycine max
Glyma.03G142700 1.0kb upstream 1.0kb upstream 10387 true Chr03: 35851067-35861453 Glycine max
Glyma.03G142700 1.0kb upstream 1.0kb upstream 1000 false Chr03: 35851067-35852066 Glycine max
Glyma.03G142700 1.0kb downstream 1.0kb downstream 10387 true Chr03: 35852067-35862453 Glycine max
Glyma.03G142700 1.0kb downstream 1.0kb downstream 1000 false Chr03: 35861454-35862453 Glycine max
Glyma.03G142700 2.0kb upstream 2.0kb upstream 11387 true Chr03: 35850067-35861453 Glycine max
Glyma.03G142700 2.0kb upstream 2.0kb upstream 2000 false Chr03: 35850067-35852066 Glycine max
Glyma.03G142700 2.0kb downstream 2.0kb downstream 11387 true Chr03: 35852067-35863453 Glycine max
Glyma.03G142700 2.0kb downstream 2.0kb downstream 2000 false Chr03: 35861454-35863453 Glycine max
Glyma.03G142700 5.0kb upstream 5.0kb upstream 14387 true Chr03: 35847067-35861453 Glycine max
Glyma.03G142700 5.0kb upstream 5.0kb upstream 5000 false Chr03: 35847067-35852066 Glycine max
Glyma.03G142700 5.0kb downstream 5.0kb downstream 14387 true Chr03: 35852067-35866453 Glycine max
Glyma.03G142700 5.0kb downstream 5.0kb downstream 5000 false Chr03: 35861454-35866453 Glycine max
Glyma.03G142700 10.0kb upstream 10.0kb upstream 19387 true Chr03: 35842067-35861453 Glycine max
Glyma.03G142700 10.0kb upstream 10.0kb upstream 10000 false Chr03: 35842067-35852066 Glycine max
Glyma.03G142700 10.0kb downstream 10.0kb downstream 19387 true Chr03: 35852067-35871453 Glycine max
Glyma.03G142700 10.0kb downstream 10.0kb downstream 10000 false Chr03: 35861454-35871453 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309249 5265 Fabidae View MSA
124060607 5270 Rosid View MSA
123737607 5271 Pentapetalae View MSA
122797393 5272 Eudicot View MSA
122043018 5273 Angiosperm View MSA
121349470 5274 Embryophyte View MSA
123427558 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.6404 0.0 28.5013    
cufflinks 10.2046 0.0 27.3824   Low
cufflinks 10.1015 0.0 27.1196   Low
cufflinks 16.4091 0.0 43.8219   High
cufflinks 17.5714 0.0 47.026   High
cufflinks 11.9472 0.0 31.9126    
cufflinks 14.2099 0.0 37.9102    
cufflinks 14.0476 0.0 37.4773    
cufflinks 11.9873 0.0 32.0182    
cufflinks 2.652        
cufflinks 1.566       Low
cufflinks 2.167        
cufflinks 3.736       High
cufflinks 4.127       High
cufflinks 1.336       Low
cufflinks 2.03        
cufflinks 1.453       Low
cufflinks 2.72        
cufflinks 2.443        
cufflinks 1.953        
cufflinks 1.867        
cufflinks 2.029        
cufflinks 2.007        
cufflinks 2.411        
cufflinks 1.748        
cufflinks 1.809        

0 Strain